abotzki
Working at VIB Technologies @vibbits, scripting in python for software projects
VIB @vibbitsGhent
Pinned Repositories
2019-05-20-UCLouvain
Data Carpentry workshop at UCLouvain, Brussels
action-transcription-demo
A tool for creating a repository of transcribed videos
armtemplates
awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
azure-quickstart-templates
Azure Quickstart Templates
bioconda-recipes
Conda recipes for the bioconda channel.
bioschemas.github.io
Files for the Bioschemas website.
bioschemas_sources
A list of sources for TeSS to scrape for relevant Bioschemas-marked-up resources
chip_seq_training
Tutorial to run a ChIP-seq analysis with Galaxy
cloud-automation
Automation for standing up Gen3 commons on AWS, GCP, Azure, and on-prem
abotzki's Repositories
abotzki/action-transcription-demo
A tool for creating a repository of transcribed videos
abotzki/armtemplates
abotzki/azure-quickstart-templates
Azure Quickstart Templates
abotzki/bioconda-recipes
Conda recipes for the bioconda channel.
abotzki/bioschemas.github.io
Files for the Bioschemas website.
abotzki/bioschemas_sources
A list of sources for TeSS to scrape for relevant Bioschemas-marked-up resources
abotzki/chip_seq_training
Tutorial to run a ChIP-seq analysis with Galaxy
abotzki/CodeReproducibility
Current URL: https://elixir-europe-training.github.io/CodeReproducibility/
abotzki/Containerize_ImageAnalysis
In this repository, we provide the code used to containerize an image analysis workflow.
abotzki/cyclops
abotzki/DeepSCAMs
flagging SCAMs
abotzki/docker-introduction
Reproducible Computational Environments using Containers
abotzki/fork-repository
This repository is made for teaching purposes.
abotzki/galaxy-hub
Galaxy Community Hub
abotzki/jupyternotebooks
abotzki/Machine-Learning-Course-2days
abotzki/Made-With-ML
abotzki/phantasus
Visual exploratory analysis of gene expression data
abotzki/RDM-LS
Session for Research Data Management in Life Sciences workshop on 10 Nov 2020. Creating and working with a reproducible data analysis environment.
abotzki/rdm-toolkit
ELIXIR Data Management Toolkit
abotzki/researchsoftware.org
International RSE website
abotzki/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
abotzki/rnaseq-nf
A proof of concept of RNAseq pipeline
abotzki/Scopy
An integrated negative design python library for desirable HTS/VS database design
abotzki/slides-test
abotzki/TeSS-materials
abotzki/The-fantastic-Beast
abotzki/training-collection
Collection of bioinformatics training materials
abotzki/VIB-template
abotzki/VIBFold