/minia

Minia is a short-read assembler based on a de Bruijn graph

Primary LanguageC++GNU Affero General Public License v3.0AGPL-3.0

Minia

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License

What is Minia ?

Minia is a short-read assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop computer in a day. The output of Minia is a set of contigs. Minia produces results of similar contiguity and accuracy to other de Bruijn assemblers (e.g. Velvet).

Getting the latest source code

Requirements

CMake 2.6+; see http://www.cmake.org/cmake/resources/software.html

c++ compiler; compilation was tested with gcc and g++ version>=4.5 (Linux) and clang version>=4.1 (Mac OSX).

Instructions

# get a local copy of minia source code
git clone --recursive https://github.com/GATB/minia.git

# compile the code an run a simple test on your computer
cd minia
sh INSTALL

User manual

Type minia without any arguments for usage instructions.

Short manual: http://minia.genouest.org/files/minia.pdf

#Contact

To contact a developer, request help, etc: https://gatb.inria.fr/contact/