/All-active-Manuscript

Code for reproducing the figures presented in: Single-neuron models linking electrophysiology, morphology and transcriptomics across cortical cell types

Primary LanguageJupyter NotebookOtherNOASSERTION

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All-active-Manuscript

Codes for generating figures presented in the All-active manuscript.

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Instructions

To run all the scripts and notebooks you need to install the code as a package.

pip install git+https://github.com/AllenInstitute/All-active-Manuscript # install directly from the repository

or

git clone https://github.com/AllenInstitute/All-active-Manuscript # clone repository from github
cd All-active-Manuscript
pip install -e . # install in editable mode

Dependencies

  • Python 3.5+
  • All-active-Workflow
  • Pandas
  • Seaborn
  • Statsmodels

Level of support

We are planning on occasional updating this tool with no fixed schedule. Community involvement is encouraged through both issues and pull requests.