/Mouse_V1_EAP_Analysis

OtherNOASSERTION

Associations between in vitro, in vivo and in silico cell classes in mouse primary visual cortex (Wei et al, 2021)

Code base for mouse V1 Neurpixels EAP data analysis

  • Method is presented in Wei et al. (2021):

Dependencies

  • Python 3.6+
  • AllenSDK
  • pandas
  • Seaborn
  • Matplotlib
  • scikit-learn
  • SciPy
  • Random
  • scikit_posthocs

Mouse Neuropixels Visual Coding Data can be downloaded through the AllenSDK (Python 3.6+):

https://allensdk.readthedocs.io/en/latest/_static/examples/nb/ecephys_data_access.html

EAP feature analysis and unit clustering:

NP_EAP_FeatureAnalysis.ipynb

This code reproduces figures for Fig.2d.

Experiment-based Classifier and Model-based Classifier:

Exp_Model_Classifier.ipynb

This code reproduces figures for Fig.3c,f,g,h.