acayuelalopez

acayuelalopez

AtheromaAnalyzer_

This Fiji or ImageJ plugin is used for splitting connecting atheroma plaque areas from aorta main area.

bUnwarpJ_code

This ImageJ/Fiji plugin performs 2D image registration based on elastic deformations represented by B-splines. The invertibility of the deformations is enforced through a consistency restriction.

bUnwarpJApply_

This is an ImageJ or Fiji plugin for aligning multi-channel z-stacks in batch-mode through image registration techniques.

CellTypeAnalyzer

:microscope: This is an ImageJ or Fiji plugin to identify, characterize, quantify and classify cells according to user-defined conditions.

FluorescenceAnalyzer_

This is an ImageJ or FIji plugin to measure fluorescence images.

FretCellType

This is a Groovy version of 'FRETENATOR_(Rowe et al 2022)' containing cell-type classification.

MitochondrialAnalyzer_

This is a Java-based plugin for quantification of mitochondrial characteristics and subsequent morphology operational under either ImageJ or Fiji.

MitochondrialFlow_

This is an ImageJ or Fiji plugin to ....

TrackAnalyzer_

This is an ImageJ or Fiji plugin to perform SPT analysis, analysis of difussion, motion classification and track filtering in batch-mode relying on the GUI.

acayuelalopez/CellTypeAnalyzer

:microscope: This is an ImageJ or Fiji plugin to identify, characterize, quantify and classify cells according to user-defined conditions.

acayuelalopez/bUnwarpJ_code

This ImageJ/Fiji plugin performs 2D image registration based on elastic deformations represented by B-splines. The invertibility of the deformations is enforced through a consistency restriction.

acayuelalopez/FretCellType

This is a Groovy version of 'FRETENATOR_(Rowe et al 2022)' containing cell-type classification.

acayuelalopez/TrackAnalyzer_

This is an ImageJ or Fiji plugin to perform SPT analysis, analysis of difussion, motion classification and track filtering in batch-mode relying on the GUI.

acayuelalopez/acayuelalopez

acayuelalopez/AtheromaAnalyzer_

This Fiji or ImageJ plugin is used for splitting connecting atheroma plaque areas from aorta main area.

acayuelalopez/bUnwarpJApply_

This is an ImageJ or Fiji plugin for aligning multi-channel z-stacks in batch-mode through image registration techniques.

acayuelalopez/FluorescenceAnalyzer_

This is an ImageJ or FIji plugin to measure fluorescence images.

acayuelalopez/MitochondrialAnalyzer_

This is a Java-based plugin for quantification of mitochondrial characteristics and subsequent morphology operational under either ImageJ or Fiji.

acayuelalopez/MitochondrialFlow_

This is an ImageJ or Fiji plugin to ....

acayuelalopez/FluoroSphereAnalyzer_

acayuelalopez/lifZMaxprojection_code

This is a Groovy script to do z-max projection, change display range per channel and select channel to be saved as Tiff or Jpeg

acayuelalopez/miplib

A Python software library with a variety of functions for (optical) microscopy image restoration, reconstruction and analysis.

acayuelalopez/NucleiCounter_

This is an ImageJ or Fiji plugin to count cell-nuclei through an indefinite number of blocks.

acayuelalopez/PSFAnalyzer_

This is an ImageJ or Fiji pluign to calculate PSF value through FWHM or microscope parameters.

acayuelalopez/QuantitativeImageAnalysisUnitCNB

My personal repository

acayuelalopez/readme-with-video

acayuelalopez/XYProteinColocalization

This is a Java-based script to measure colocalization between X protein and Y protein within specific cell regions or whole cell.