acollens
Evolutionary Microbiologist. 2nd Year Ph.D. Student at University of Maryland Prev. Bioinformatician @SchlossLab
University of Maryland
Pinned Repositories
20231207_practice_workshop
creating a site for our practice workshop
acollens.github.io
My personal website, created with Quarto
Flye
De novo assembler for single molecule sequencing reads using repeat graphs
ghg-processor
Processing code for LI-7810 gas concentration data
intro-curriculum-r
Custom curriculum for teaching R, the Unix Shell, & Git with an integrated workflow and reproducible research practices.
MetaCarvel
MetaCarvel: A scaffolder for metagenomes
mikropml-snakemake-workflow
Snakemake template for building reusable and scalable machine learning pipelines with mikropml
parsimony_module
in-progress curriculum page for a parsimony scoring module
quotes
r-novice-gapminder
R for Reproducible Scientific Analysis
acollens's Repositories
acollens/20231207_practice_workshop
creating a site for our practice workshop
acollens/acollens.github.io
My personal website, created with Quarto
acollens/Flye
De novo assembler for single molecule sequencing reads using repeat graphs
acollens/ghg-processor
Processing code for LI-7810 gas concentration data
acollens/intro-curriculum-r
Custom curriculum for teaching R, the Unix Shell, & Git with an integrated workflow and reproducible research practices.
acollens/MetaCarvel
MetaCarvel: A scaffolder for metagenomes
acollens/mikropml-snakemake-workflow
Snakemake template for building reusable and scalable machine learning pipelines with mikropml
acollens/parsimony_module
in-progress curriculum page for a parsimony scoring module
acollens/quotes
acollens/r-novice-gapminder
R for Reproducible Scientific Analysis
acollens/schlosslab.github.io
The website for the Schloss Lab at the University of Michigan
acollens/severe-CDI
Predicting CDI severity from OTUs
acollens/skills-code-with-codespaces
Repository from GitHub to learn more about its functions and tools