acontrerasg
Biologist learning bioinformatics. Interested in the complex and repetitive part of genomes.
EEP - CNRS - Lille
Pinned Repositories
denovoTE-eval
Supporting repository for article "Software Evaluation for 'de novo' Detection of Transposons"
EDTA
Extensive de-novo TE Annotator
emojicode
😀😜🔂 World’s only programming language that’s bursting with emojis
Helitron
TE annotation pipeline Helitron Scanner
Insect_REs
Scripts and data files used to study repetitive elements across insects in "The repetitive element landscape of insects"
maize_genomic_ecosystem
moiR
Useful R functions for an easier life and analyses
nlr_cluster_survey
popTAP
This repository contains a custom pipeline used to asses transposon absence polymorphisms (TAP) using short read illumina data.
Tarvense_transposon_dynamics
acontrerasg's Repositories
acontrerasg/Tarvense_transposon_dynamics
acontrerasg/denovoTE-eval
Supporting repository for article "Software Evaluation for 'de novo' Detection of Transposons"
acontrerasg/EDTA
Extensive de-novo TE Annotator
acontrerasg/emojicode
😀😜🔂 World’s only programming language that’s bursting with emojis
acontrerasg/Helitron
TE annotation pipeline Helitron Scanner
acontrerasg/Insect_REs
Scripts and data files used to study repetitive elements across insects in "The repetitive element landscape of insects"
acontrerasg/maize_genomic_ecosystem
acontrerasg/moiR
Useful R functions for an easier life and analyses
acontrerasg/nlr_cluster_survey
acontrerasg/popTAP
This repository contains a custom pipeline used to asses transposon absence polymorphisms (TAP) using short read illumina data.
acontrerasg/public
acontrerasg/pafr
Read, manipulate and visualize 'Pairwise mApping Format' data in R
acontrerasg/RepeatMasker
RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
acontrerasg/scripts
Scripts for analysis used during the course
acontrerasg/SVs_in_1301_A.thaliana_lines
Structural Variation Calling Pipeline with NGS Data
acontrerasg/vorkurs