Pinned Repositories
acorbat.github.io
adjutant
A python based slack bot that interprets commands and runs code through chat.
anisotropy_errors
A small interactive package to test and study the effecto of different sources of noise and errors in anisotropy estimation.
caspase_model
Variations to EARM used in papers published from Grecco's Lab.
folder_convention
An overview of possible way of organizing project folders.
gulliver
An image analysis package for whole slide liver immunostainings
img_manager
Aimed to managing image files ordered in folders.
lantz
Lantz is an automation and instrumentation toolkit with a clean, well-designed and consistent interface. It provides a core of commonly used functionalities for building applications that communicate with scientific instruments allowing rapid application prototyping, development and testing. Lantz benefits from Python’s extensive library flexibility as a glue language to wrap existing drivers and DLLs.
teaching
Small package to upload teaching examples of several different things.
FW10
1" Filter Wheel
acorbat's Repositories
acorbat/folder_convention
An overview of possible way of organizing project folders.
acorbat/acorbat.github.io
acorbat/anisotropy_errors
A small interactive package to test and study the effecto of different sources of noise and errors in anisotropy estimation.
acorbat/apoptoside
Analysis for apoptotic cascade experiments.
acorbat/caspase_model
Variations to EARM used in papers published from Grecco's Lab.
acorbat/gulliver
An image analysis package for whole slide liver immunostainings
acorbat/barcode_library_characterizer
A small package for characterizing big (huge) libraries of barcodes.
acorbat/base_paper
Clean paper to use as starting point.
acorbat/Bio-image_Analysis_with_Python
Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecular and Cellular Bioengineering (CMCB) / University of Technology, TU Dresden
acorbat/earm
Extrinsic Apoptosis Reaction Model
acorbat/EMBO-Practical-Course-2023
Advanced methods in bioimage analysis
acorbat/git_workshop
a small repository with a single file to practice git skills.
acorbat/gnn_transformers_notebooks
Notebooks for the ENCCS Graph Neural Networks and Transformers workshop
acorbat/gpu-programming
Meta-GPU lesson covering general aspects of GPU programming as well as specific frameworks
acorbat/is_even
A function to check that a number is even.
acorbat/is_odd
checks if number is odd
acorbat/lintrec
Small package containing useful tools to analyze and interpret lineage tracing experiments.
acorbat/liver_lineage_test
Small model to analyze liver lineage tracing model from Ober paper.
acorbat/morphocilia
Package for cilia segmentation and morphological description, and bile duct and canaliculi regionalization during development of liver thick sections.
acorbat/my_checksum
Generate an excelsheet with the MD5 checksum of all files inside the provided path.
acorbat/my_profiles
A little repo to keep my profile and settings files.
acorbat/organoid_analyzer
Segmenter and morphological analyzer for organoids.
acorbat/planets-acorbat
acorbat/programming_formalisms
Repository for the Programming Formalisms course
acorbat/programming_formalisms_testing
Lesson 'testing' of the UPPMAX Programming Formalisms course
acorbat/radiobiologia
Notebooks interactivos para entender mejor radiobiología
acorbat/readlif
Fast Leica LIF file reader written in python
acorbat/risk_and_req_acorbat
Short document to list and plan projects.
acorbat/tesis_doctoral
Mi tesis doctoral sobre Microespectroscopía aplicada a la cuantificación y modelado de la propagación de señales en redes biológicas.
acorbat/TREX
Simultaneous lineage TRacking and EXpression profiling of single cells using RNA-seq