Antigenic Cartography

The Centre for Pathogen Evolution, Department of Zoology, University of Cambridge, UK

Cambridge, UK

Pinned Repositories

accourse2019
Repository for course materials for the antigenic cartography and antibody landscapes course 2019
Language:R6 2 110
acmacs-build
Language:Makefile2 6 00
beast2-xml
Python code to generate BEAST2 XML files
Language:Python17 8 15
dark-matter
Virus discovery
Language:Python15 10 3897
figtree-recolor
A script to re-color a FigTree saved Nexus file
Language:Python11 7 16
gor4
Python class providing an interface to GOR4 amino acid structure prediction C code
Language:C2 6 10
ncbi-taxonomy-database
How to make a mysql or sqlite database of NCBI taxonomy data for use with the dark-matter lineage fetcher
Language:Shell7 6 32
pymds
Metric multidimensional scaling in python
Language:Python4 6 41
Racmacs
Racmacs R package for performing antigenic cartography
Language:JavaScript20 7 1189
slurm-pipeline
A Python class for scheduling SLURM jobs
Language:Python57 7 2612

Antigenic Cartography's Repositories

acorg/slurm-pipeline
A Python class for scheduling SLURM jobs
Language:Python57 7 2612
acorg/Racmacs
Racmacs R package for performing antigenic cartography
Language:JavaScript20 7 1189
acorg/beast2-xml
Python code to generate BEAST2 XML files
Language:Python17 8 15
acorg/dark-matter
Virus discovery
Language:Python15 10 3897
acorg/ncbi-taxonomy-database
How to make a mysql or sqlite database of NCBI taxonomy data for use with the dark-matter lineage fetcher
Language:Shell7 6 32
acorg/ablandscapes
An R package for making antibody landscapes
Language:R2 4 14
acorg/acmacs-build
Language:Makefile2 6 00
acorg/acmacs-py
Python module for acmacs
Language:Python1 6 00
acorg/acutilsLite
Language:R1 6 43
acorg/lispmds
LispMDS
Language:Common Lisp1 15 191
acorg/mapping_SARS-CoV-2_antigenic_relationships_and_serological_responses
Language:HTML1 6 02
acorg/roessler_netzl_et_al2023
This repository contains the code for the manuscript "Characterizing SARS-CoV-2 neutralization profiles after bivalent boosting using antigenic cartography" by Annika Rössler, Antonia Netzl, et. al., 2023
Language:JavaScript1 6 0
acorg/acmacs-base
Scripts and utilities for acmacs-d modules
Language:C++6 0
acorg/acmacs-chart-2
Accessing chart data
Language:C++6 0
acorg/acmacs-map-draw
Drawing antigenic maps
Language:C++6 0
acorg/acmacs-tal
Tree et al.
Language:C++5 0
acorg/acmacs-whocc
Programs and scripts for WHO CCs chains
Language:Python6 01
acorg/acmacs-whocc-data
Data files with WHO CC related data and library to read them
Language:C++6 0
acorg/antigenic_cartography_introduction
Language:HTML
acorg/branche_et_al2023
This repository contains the code to construct antibody landscapes for the CoVAIL clinical trial.
Language:HTML6 0
acorg/comparison_of_sars-cov-2_antigenic_characteristics
Language:R4 01
acorg/hidb-5
HiDb maker
Language:C++6 0
acorg/midtools
Multiple Infection Detection - Python for detecting multiple infections from sequence reads and trying to pick them apart
Language:Python5 1
acorg/netzl_et_al2024
Language:JavaScript
acorg/roessler_netzl_et_al2022
Code repository for "BA.2 and BA.5 omicron differ immunologically from both BA.1 omicron and pre-omicron variants" by Roessler, A., Netzl, A., et al.
Language:R5 0
acorg/roessler_netzl_et_al2023a
This repository holds the code for the species comparison between human and hamster SARS-CoV-2 neutralisation data, published by Rössler, Netzl et al.
Language:R5 0
acorg/roessler_netzl_et_al2024
Code repository for the non-human primate antigenic cartography manuscript by Rössler, Netzl, et al. 2024
Language:HTML
acorg/seqdb-3
Set of tools to build and query sequence database v3
Language:C++5 0
acorg/seqgen
Python code for generating sequences in FASTA format
Language:Python6 31
acorg/signature-page
Programs to import phylogenetic tree and draw it on a tree or signature page
Language:C++3 01