Pinned Repositories
Bio-FeatureIO
Sequence Feature streams
bulbs
Scripts for controlling my WiZ bulbs
chado-functions
My own implementation of a few missing functions from Chado.
compressed_json
A library for working with compressed collections of JSON objects (like those used by Pushshift).
dcm
Digital Color Meter for Windows
distance_sequence_simulator
Sequence simulator for testing homolog_distance.
dnted
Python library for computing a normalized tree edit distance metric
excel-funChart
MATLAB code to create nice plots of functions in Excel.
powershell-backup
Simple PowerShell script for making regular file backups using a configuration file
actapia's Repositories
actapia/bulbs
Scripts for controlling my WiZ bulbs
actapia/excel-funChart
MATLAB code to create nice plots of functions in Excel.
actapia/powershell-backup
Simple PowerShell script for making regular file backups using a configuration file
actapia/chado-functions
My own implementation of a few missing functions from Chado.
actapia/compressed_json
A library for working with compressed collections of JSON objects (like those used by Pushshift).
actapia/dcm
Digital Color Meter for Windows
actapia/distance_sequence_simulator
Sequence simulator for testing homolog_distance.
actapia/download_sra
Download sequence reads from SRA with quality information.
actapia/entrez_utils
Access Entrez from Python with support for BioProject, BioSample, and SRA objects
actapia/FractalFlameViewer
Java-based fractal flame generator that supports multithreading.
actapia/java_version
Switch between Java versions easily.
actapia/JavaPrintf
Java-based printf-like utility
actapia/lazy_format
Simple way to have partially applied formatted strings
actapia/name_conflict_resolver
Python library for deciding how to rename conflicting file paths.
actapia/nice_colorsys
Possibly nicer way of working with color systems.
actapia/optionsh
Option parser for Bash based on options++
actapia/optionsh-bash
Parse arguments with optionsh from bash
actapia/pushshift_filter
Filter Pushshift archives by subreddit.
actapia/putty-registry
Python classes for working with PuTTY settings in the Windows registry
actapia/pyoptionsh
Python implementation of optionsh based on argparse
actapia/registry_utils
My utilities for working with the Windows registry.
actapia/rna_clique
Compute genetic distance matrices using RNA-seq data alone
actapia/rssh-notes
Notes about setting up rssh with chroot jails.
actapia/scikit-bio
scikit-bio is an open-source, BSD-licensed, Python package providing data structures, algorithms, and educational resources for bioinformatics.
actapia/select_top_genes
Select genes with highest coverage from an assembly.
actapia/simple_blast
A simple Python library for executing BLAST searches with ncbi-blast+.
actapia/TeloPortWrapper
actapia/TTMF
TTMF: A Triple Trustworthiness Measurement Frame for Knowledge Graphs
actapia/uky-ngs-workshop-user-install
Install scripts for the UK/KY INBRE Essentials of NGS Workshop
actapia/uky-openstack-backup
Script for backing up VMs on OpenStack at University of Kentucky