adamd3

Bioinformatics, genomics.

University of CambridgeCambridge, England

Pinned Repositories

adamd3.github.io
Repository for my personal site
Language:HTML1 1 00
bactmap
A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences
Language:Nextflow0 0 00
BactSeq
A nextflow pipeline for performing bacterial RNA-Seq data analysis.
Language:Nextflow7 1 31
cf-express
A web app for exploring gene expression data from Cystic Fibrosis patients
Language:JavaScript0 1 00
codondiffR
Inter-taxon comparison of codon usage
Language:R1 2 10
OrthoQuant
A Nextflow pipeline for performing bacterial RNA-Seq analysis without a reference genome.
Language:Nextflow1 1 00
PathoGeneLit
Tools for mining the pathogen gene literature
Language:TypeScript00
RNA-virus-taxonomy
Methods for the analysis of RNA virus taxonomy.
Language:Jupyter Notebook0 2 00
wordpress-local-development
Setup for local development of Wordpress sites using Docker compose.
Language:Dockerfile00

adamd3/BactSeq
A nextflow pipeline for performing bacterial RNA-Seq data analysis.
Language:Nextflow7 1 31
adamd3/adamd3.github.io
Repository for my personal site
Language:HTML1 1 00
adamd3/codondiffR
Inter-taxon comparison of codon usage
Language:R1 2 10
adamd3/OrthoQuant
A Nextflow pipeline for performing bacterial RNA-Seq analysis without a reference genome.
Language:Nextflow1 1 00
adamd3/bactmap
A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences
Language:Nextflow0 0 00
adamd3/cf-express
A web app for exploring gene expression data from Cystic Fibrosis patients
Language:JavaScript0 1 00
adamd3/PathoGeneLit
Tools for mining the pathogen gene literature
Language:TypeScript00
adamd3/pseudomancer
A command line tool for reconstructing pseudogenes in prokaryotic genomes
Language:Python0 1 00
adamd3/RNA-virus-taxonomy
Methods for the analysis of RNA virus taxonomy.
Language:Jupyter Notebook0 2 00
adamd3/wordpress-local-development
Setup for local development of Wordpress sites using Docker compose.
Language:Dockerfile00