Pinned Repositories
bamsurgeon
tools for adding mutations to existing .bam files, used for testing mutation callers
discord-retro
Find non-reference TE insertions from discordant read pair mappings
GRIPper
Find non-reference processed pseudogene insertions from discordant read pair mappings
GRIPper2
Detect gene retrocopy insertion polymorphisms (GRIPs) from short-read paired-end WGS data
methylartist
Tools for plotting methylation data in various ways
nanorama
Real-time overview of nanopore targeted sequencing
te-nanopore-tools
tools for plotting and parsing methylation aimed at TEs
tebreak
Find and characterise transposable element insertions
tldr
Identify and annotate TE-mediated insertions in long-read sequence data
VCFcomparator
Tool for comparing mutation calls in VCF format
adamewing's Repositories
adamewing/bamsurgeon
tools for adding mutations to existing .bam files, used for testing mutation callers
adamewing/methylartist
Tools for plotting methylation data in various ways
adamewing/tldr
Identify and annotate TE-mediated insertions in long-read sequence data
adamewing/tebreak
Find and characterise transposable element insertions
adamewing/VCFcomparator
Tool for comparing mutation calls in VCF format
adamewing/te-nanopore-tools
tools for plotting and parsing methylation aimed at TEs
adamewing/GRIPper
Find non-reference processed pseudogene insertions from discordant read pair mappings
adamewing/discord-retro
Find non-reference TE insertions from discordant read pair mappings
adamewing/GRIPper2
Detect gene retrocopy insertion polymorphisms (GRIPs) from short-read paired-end WGS data
adamewing/l1seq
adamewing/methylartist-tests
Test data and examples for methylartist
adamewing/nanorama
Real-time overview of nanopore targeted sequencing
adamewing/align
Performs global and local sequence alignment.
adamewing/bio-playground
miscellaneous scripts for bioinformatics/genomics that dont merit their own repo.
adamewing/bioconda-recipes
Conda recipes for the bioconda channel.
adamewing/dep
misc dependency repo
adamewing/edots
Expression Divergence Over Time Series
adamewing/exonerate
A generic tool for sequence alignment
adamewing/IAP-Replication
adamewing/l1seq.old
Scripts for analyzing "L1-seq" data generated by targeted L1-specific sequencing (Ewing and Kazazian 2010, doi:10.1101/gr.106419.110)
adamewing/rust-htslib
This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.