adamkucharski/fiji-denv3-2014

Accompanying code for: Kucharski AJ, Kama M et al. Using paired serology and surveillance data to quantify dengue transmission and control during a large outbreak in Fiji. eLife, 2018

fiji-denv3-2014

Summary

This repository contains code to accompany analysis of the 2013/14 Fiji dengue outbreak.

Guide to script files

serological_analysis_main.R Main statistical analysis code (Figures 1-4)

dynamic_model_main.R Main mathematical modelling code (Figure 5)

Reference:

Kucharski AJ, Kama M, Watson CH et al. (2018) Using paired serology and surveillance data to quantify dengue transmission and control during a large outbreak in Fiji. eLife