adderan

Santa Cruz, CA

Pinned Repositories

bme205
Language:Python1 1 01
brca_structural
Language:R0 1 00
cactus
Genome aligner based upon notion of Cactus graphs
Language:C0 1 00
cactus-docker-lib
Dockerfiles for progressiveCactus pipeline
Language:Makefile0 1 00
cactus2hal
Convert progressive cactus database into a hal file
Language:C++0 1 00
cactusBuild
Language:Makefile0 1 00
ww-scattering
Language:C++0 1 00
cactus
Official home of genome aligner based upon notion of Cactus graphs
Language:C506 22 841112
sonLib
Small general-purpose library for C and Python with an emphasis on bioinformatics.
Language:C7 6 54
toil
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
Language:Python894 55 3k241

adderan's Repositories

adderan/bme205
Language:Python1 1 01
adderan/cactus
Genome aligner based upon notion of Cactus graphs
Language:C0 1 00
adderan/cactus-docker-lib
Dockerfiles for progressiveCactus pipeline
Language:Makefile0 1 00
adderan/cactus2hal
Convert progressive cactus database into a hal file
Language:C++0 1 00
adderan/cactusBuild
Language:Makefile0 1 00
adderan/ww-scattering
Language:C++0 1 00
adderan/cactusCluster
Language:Python1 0
adderan/cactusRepeats
Language:Python
adderan/CactusTEAnnotator
Language:C1 0
adderan/cgcloud
Image and VM management for Jenkins, Spark and Mesos clusters in EC2
Language:Python1 0
adderan/configfiles
Language:Vim Script1 0
adderan/cPecan
C + python code for pairwise multiple sequence alignment, pulling out this functionality from the Cactus alignment program.
Language:C
adderan/dovetailAlligator
Language:Python
adderan/fft
FFT library for https://www.topcoder.com/challenges/30061526/?type=develop&tab=details
Language:C1 0
adderan/infinigene
Language:JavaScript1 0
adderan/js-ui-elements
Language:JavaScript
adderan/kentToolBinaries
adderan/ml-labeling-tools
An interface for working on machine learning models, using infinityDB as the backend
Language:JavaScript
adderan/multitask
Language:R
adderan/one_off_scripts
A repository for example scripts or one-offs that don't belong anywhere else
Language:Python
adderan/Papers
Language:TeX1 0
adderan/parasol-binaries
adderan/physics-thesis
Language:TeX1 0
adderan/progressiveCactus
Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules
Language:Python
adderan/scripts
Language:Python1 0
adderan/sonLib
Small general purpose library for C and Python with focus on bioinformatics.
Language:C
adderan/toil
Python based pipeline management software for clusters that makes running recursive and dynamically scheduled computations straightforward. So far works with gridEngine, lsf, parasol and on multi-core machines.
Language:Python
adderan/toil-lib
A common library for functions and tools used in toil-based pipelines
Language:Python
adderan/toil-test-scripts
Language:Python1 0
adderan/TwoPaCo
A fast constructor of the compressed de Bruijn graph from many genomes
Language:C++