adeslatt
https://orcid.org/0000-0001-7951-3439 PhD Tumor Biology, MSc Computer Science, BSc Mathematics solving biological questions at scale in the cloud
Science and Technology Consulting LLC
Pinned Repositories
cDNA-cupcake-docker
This is the repository for the Dockerfile made to containerize and make the package available for the tools in https://github.com/Magdoll/cDNA_Cupcake. The package is automatically built and pushed upon any push to the repository using GitHub actions.
drop
Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders
Kids-First-Elements-of-Style-Workflow-Creation-Maintenance
post-rmats-single-run
post-rmats-single-run
rmats-ijc-analysis
rmats-ijc-analysis
sync-seq
A Nextflow workflow encapsulating the computational components to take output from the 15:1 molar libraries of gDNA:cDNA sequenced on the PacBio Revio following the protocols published in "Synchronized long-read genome, methylome, epigenome, and transcriptome for resolving a Mendelian condition".
Elements-of-Style-Reproducible-Workflow-Creation-Maintenance-Tutorial
dry-bench-skills-for-researchers
Learning resources originally for a class held December 2020 "Dry bench skills for Researchers". Expanding based upon mini-courses.
sbas
CloudOS Digital Research Environment
splicing-pipelines-nf
Repository for the Anczukow-Lab splicing pipeline
adeslatt's Repositories
adeslatt/post-rmats-single-run
post-rmats-single-run
adeslatt/biojupies
Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.
adeslatt/sync-seq
A Nextflow workflow encapsulating the computational components to take output from the 15:1 molar libraries of gDNA:cDNA sequenced on the PacBio Revio following the protocols published in "Synchronized long-read genome, methylome, epigenome, and transcriptome for resolving a Mendelian condition".
adeslatt/covid
Workflows to be run for Diagnostics on new and existing data
adeslatt/decoupler-py
Python package to perform enrichment analysis from omics data.
adeslatt/DESeq2_Tutorial_Airway
Rendering into an R notebook the DESeq2 notebook on Airway data
adeslatt/fiberseq-fire-docker
adeslatt/gotranseq-docker
Container for go-transeq
adeslatt/hifiasm-docker
adeslatt/hiphase-docker
adeslatt/k-mer-variant-phasing-docker
adeslatt/LINGER
adeslatt/Long-Read-Proteogenomics
A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
adeslatt/nlm-kn-cell-ui-exploration
NLM Knowledge Network Cell User Interface Exploration
adeslatt/nlm-kn-llm-sparql
Directory containing scripts to build a LLM for the BioPortal Cell Ontology - for the NLM Knowledge Network
adeslatt/nlm-knowledgebase-model
adeslatt/NLM_cell_UI
NLM Cell Browser UI to NLM Cell Phenotype Knowledge base
adeslatt/NSForest
A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA sequencing
adeslatt/nsforest-docker
adeslatt/pb-cpg-tools-docker
adeslatt/pbfusion-docker
adeslatt/pbsv-docker
adeslatt/RIT_retreat_CICD
Examples for git/devops lesson on March 11, 2020
adeslatt/RIT_Retreat_HelloWorld
This is an example repository for the RIT retreat
adeslatt/scanpy
Single-cell analysis in Python. Scales to >1M cells.
adeslatt/scRNAseq-cell-type
Probabilistic gene expression barcodes for cell type annotation
adeslatt/skills-github-pages
My clone repository
adeslatt/springbok-ncbi-cell
adeslatt/university
Educational materials for the St. Jude Cloud project.
adeslatt/yak-docker