hpc_setup: A Shell repository from adianliusie

Getting Torch working on HPC

My HPC files

My SLURM submit script : submit.sh
my .bashrc : .bashrc
python environment : python_env.txt
requirements.txt : requirements.txt

*note that requirement.txt is not the same as the python environment, since installing a module can install multiple other modules, and secondly some libraries require external links to be downloaded

Getting a basic working torch environment

This will now be a quick tutorial on how to get a working python environment that works on the Cambridge High Performance Computing (HPC) system with pytorch.

load python 3.8 into the session:

module load python/3.8

create a new environment:

python -m venv env_1

activate the environment, upgrade pip, and install pytorch 1.9+cuda11.1:

source env_1/bin/activate 
pip install --upgrade pip
pip install torch==1.9.1+cu111 torchvision==0.10.1+cu111 torchaudio==0.9.1 -f https://download.pytorch.org/whl/torch_stable.html

This version of pytorch should work for both jobs on ampere and pascal machines on the HPC

Tested torch+cuda combinations (working on both ampere and pascal)

torch 1.9 + cuda 11.1

pip install torch==1.9.1+cu111 torchvision==0.10.1+cu111 torchaudio==0.9.1 -f https://download.pytorch.org/whl/torch_stable.html

torch 1.10 + cuda 11.1

pip install torch==1.10.0+cu111 torchvision==0.11.0+cu111 torchaudio==0.10.0 -f https://download.pytorch.org/whl/torch_stable.html

torch 1.12 + cuda 11.3

pip install torch torchvision torchaudio --extra-index-url https://download.pytorch.org/whl/cu113

*all of the above environments don't seem to require cuda to be loaded. I have commented out the module load line in the submit script, and it still works on gpu

Failed torch+cuda versions

torch1.12+cu11.6 (cuda 11.6 seems to be unavailable on the current machines)
torch1.12+cu10.2 (cuda 10.2 is too old to work on ampere)

Cuda

Certain GPU machines are only compatible with certain versions of cuda, while pytorch is installed only compatible with a certain version of cuda (as far as I understand).

Cuda versions available on hpc: [9.1, 9.2, 10.0, 10.1, 10.2, 11.0, 11.1, 11.2, 11.4]
One can load different cuda versions using module load. For example to load cuda 11.2, use

module load cuda/11.2