[JOSS REVIEW] Error messages in the Example section of plot_deseq2_pq documentation

[iimog]

The example on this page seems to be broken on the build system:
https://adrientaudiere.github.io/MiscMetabar/reference/plot_deseq2_pq.html

When I run this example locally, it mostly works. I can see plots but in the last step I get the message:

None taxa present significant distribution pattern through contrast."

[iimog]

Related to openjournals/joss-reviews#6038

[adrientaudiere]

This may be related to a conflict of dataset. Both phyloseq and mia package contain a GlobalPatterns dataset. In the version 0.51, all calls to GlobalPatterns are corrected as follows :

data("GlobalPatterns", package = "phyloseq")

I will verify this page adrientaudiere.github.io/MiscMetabar/reference/plot_deseq2_pq.html after the upgrade to v.0.51.

[adrientaudiere]

Problem solves in the documentation for v0.51.