ngs-analysis
There are 194 repositories under ngs-analysis topic.
open2c/bioframe
Genomic interval operations on Pandas DataFrames
harbourlab/SparK
Publication quality NGS track plotting
CenterForMedicalGeneticsGhent/WisecondorX
WisecondorX — An evolved WISECONDOR
hyunhwan-jeong/SalmonTE
SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances
BU-ISCIII/iskylims
is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.
YichaoOU/HemTools
HemTools: a collection of NGS pipelines and bioinformatic analyses
JhuangLab/BioInstaller
A comprehensive R package to construct interactive and reproducible biological data analysis applications based on the R platform
Candlelight-XYJ/Bioinformatics-Project
生物信息学项目实践仓库🏆🥇
BU-ISCIII/plasmidID
PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identification.
Geo-omics/scripts
Metagenomic pipeline and other general scripts used in the lab.
praneet1988/CSBB-Shiny
Computational Suite for Bioinformaticians and Biologists (CSBB) is a RShiny application developed with an intention to empower researchers from wet and dry lab to perform downstream Bioinformatics analysis
amarinderthind/RNA-seq-tutorial-for-gene-differential-expression-analysis
This tutorial is created for educational purpose
sib-swiss/NGS-variants-training
GitHub for the SIB courses NGS - Genome variant analysis
ncbi/pm4ngs
Project Manager for NGS data analysis
ncbi/cwl-ngs-workflows-cbb
A set of CWL tools and workflows used by NCBI Computational Biology Branch for NGS data analysis
TomKellyGenetics/graphsim
R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)
PavlidisLab/rnaseq-pipeline
RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
gitHBDX/TransfoRNA
TransfoRNA: Navigating the Uncertainties of Small RNA Annotation with an Adaptive Machine Learning Strategy
praneet1988/ELeFHAnt
Ensemble Learning for Harmonization and Annotation of Single Cells (ELeFHAnt) provides an easy to use R package for users to annotate clusters of single cells, harmonize labels across single cell datasets to generate a unified atlas and infer relationship among celltypes between two datasets. It uses an ensemble of three machine learning classifiers 1) RF 2) SVM and 3) LR
ArcInstitute/ScreenPro2
Flexible analysis of high-content CRISPR screening
jordanlab/STing
Ultrafast sequence typing and gene detection from NGS raw reads
Genometric/MSPC
Using combined evidence from replicates to evaluate ChIP-seq peaks
SouthGreenPlatform/TOGGLE
Toolbox for generic NGS analyses - A framework to quickly build pipelines and to perform large-scale NGS analysis
mccoy-lab/LD-PGTA
Linkage disequlibrium-informed PGT-A (LD-PGTA). A package for detecting genotypic signatures of aneuploidy from extremely low-coverage sequence data.
afrendeiro/toolkit
A toolkit for NGS analysis with Python
ANGSD-wrapper/angsd-wrapper
Utilities for analyzing next generation sequencing data.
Crazzy-Rabbit/Script-in-PopGenetics
群体遗传学分析中用到的script和skill等
NBISweden/workshop-ngsintro
Workshop • Intro to Bioinformatics using NGS data • 5 days
odb9402/CNNPeaks
The ChIP-Seq peak calling algorithm using convolution neural networks
sib-swiss/NGS-introduction-training
SIB course that introduces analysis of NGS data
adrientaudiere/MiscMetabar
R package MiscMetabar: Miscellaneous functions for metabarcoding analysis
soedinglab/BaMMmotif2
Bayesian Markov Model motif discovery tool version 2 - An expectation maximization algorithm for the de novo discovery of enriched motifs as modelled by higher-order Markov models.
mskcc/facets2n
Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing using unmatched normal sample(s) for log ratio calculations
RIVM-bioinformatics/AmpliGone
A tool in order to accurately remove primer sequences from NGS reads in an amplicon experiment
mobidic/SEAL
SEAL db - Simple, Efficient And Lite database for NGS