Pipeline that aims to assess the accuracy of commonly used algorithms for calling copy number alterations from Affymetrix SNP 6.0 array data in the presence of confounding variables.
Author: Adriana Pitea
Contact: adriana.pitea@gmail.com
Description: This pipeline was built to assess the accuracy of commonly used copy number alteration (CNA) calling algorithms from Affymetrix SNP 6.0 array data in the presence of confounding variables such as normal DNA contamination and CNA region length.