aebrer
PhD Structural Biologist with an emphasis in data science and visualization, machine learning, and software development. I also make generative art.
Toronto, ON
Pinned Repositories
GenuaryTogether2023
halite2018
My bot for the Halite challenge 2018
pico8_art
a place for some of my pico8 art to live
pico8_fxhash_tutorial
the example scripts used during my pico8 fxhash tutorial
ThreeBodyProblem
A place to store my PICO-8 games during development.
tidy_dict
A single location to store my NestedDict type for use in Python
uncomplicatedIChing
A repo for the source code of my I Ching Android app
winnower
deriver
ensemblator
The purpose of this program is to create ensembles from pdb files, and then to intelligently compare those ensembles. Many useful insights can be gained from directly comparing two whole ensembles; as well, there is an option to automatically try to identify different groups within a single ensemble, and compare those.
aebrer's Repositories
aebrer/winnower
aebrer/uncomplicatedIChing
A repo for the source code of my I Ching Android app
aebrer/GenuaryTogether2023
aebrer/pico8_art
a place for some of my pico8 art to live
aebrer/pico8_fxhash_tutorial
the example scripts used during my pico8 fxhash tutorial
aebrer/tidy_dict
A single location to store my NestedDict type for use in Python
aebrer/assessing_mol_prediction_confidence
https://arxiv.org/abs/2102.11439
aebrer/halite2018
My bot for the Halite challenge 2018
aebrer/ThreeBodyProblem
A place to store my PICO-8 games during development.
aebrer/aebrer.github.io
A place to host my linktree
aebrer/backtrace_aligner
Align sequences using an affine gap penalty modified to use less memory but slightly more calculations.
aebrer/crackedDice
A Mod Item for The Binding of Rebirth Afterbirth+
aebrer/crem
CReM: chemically reasonable mutations framework
aebrer/deriver
aebrer/genuary23_04_intersections
aebrer/howtoanything.github.io
The official website repo for the How To Anything podcast.
aebrer/minimo
Minimo - Minimalist theme for Hugo
aebrer/pyxel
A retro game engine for Python
aebrer/qmk_firmware
keyboard controller firmware for Atmel AVR and ARM USB families
aebrer/rdkit-installer
A command that builds and installs RDKit from source on Ubuntu.
aebrer/reassigner
This software reads pdb files (or downloads them from the web) and assigns secondary structure. These assignments are based on the synthesis of two different models: a virtual geometry model and a phi/psi2 motif model. This software can identify many aspects of secondary structure, including beta-bulges. Human readable or machine readable output is available.
aebrer/teia_newsletter_discord_bot
a discord notification bot for subscribing to Teia newsletters
aebrer/website