Pinned Repositories
gbd
Generic Disease Modelling System
pymc-examples
PyMC Example Notebooks
pymc-mixing-movies
Demonstration of how different step methods mix in PyMC
pymc-multilevel-example
Example Multilevel Model in PyMC
pymc-networkx-bdst
Bounded Depth Spanning Tree MCMC Sampler
pymc_bayes_factor
Compute Bayes Factor for PyMC model selection
aflaxman's Repositories
aflaxman/dp_2020_census
Code and Writing about Differential Privacy in the 2020 US Census (and maybe data)
aflaxman/dismod_mr
An Integrative Metaregression Framework for Descriptive Epidemiology
aflaxman/ppmf_12.2_reid
Simulation study of re-identification risk in ppmf_20210428_eps12-2_P
aflaxman/Probabilistic-Programming-and-Bayesian-Methods-for-Hackers
aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)
aflaxman/synth_hh
add household structure to synthetic populations from https://github.com/beatrixkh/synthetic_pop
aflaxman/vivarium_dla
Diffusion Limited Aggregation in Vivarium
aflaxman/covid-model-deaths
The IHME Covid-19 Statistical deaths model
aflaxman/covid_deconvolution
Statistical model for deconvolution of population-level COVID signals
aflaxman/covid_hcw_rr
Replication archive for "The relative incidence of COVID-19 in healthcare workers versus non-healthcare workers: evidence from a web-based survey of Facebook users in the United States"
aflaxman/covid_mabs
aflaxman/dash_recipes
Recipes for little things in Dash module for Python
aflaxman/eqpl_w_examples
Empirical quantification of privacy loss with examples relevant to the 2020 US Census
aflaxman/InSilicoVA-sim
aflaxman/lifelines
Survival analysis in Python
aflaxman/linked_census_disclosure
aflaxman/pcds_kaleidoscope
Parent-child data science project: kaleidoscopes in python
aflaxman/performance_of_insilicova_replication_archive
Replication Archive for the paper "Performance of InSilicoVA for assigning causes of death to verbal autopsies: multisite validation study using clinical diagnostic gold standards"
aflaxman/python-novice-inflammation
Software Carpentry introduction to Python for novices using inflammation data.
aflaxman/risk_distributions
aflaxman/sciris_paper
Journal paper describing Sciris
aflaxman/singularity-introduction
An introduction to singularity
aflaxman/SmartVA-Analyze
SmartVA-Analyze Desktop Application
aflaxman/vivarium-experiment-stillbirth
Experimental components to include stillbirth in a vivarium model
aflaxman/vivarium_cluster_tools
Tools for running Vivarium simulations on IHME's Univa Grid Engine cluster
aflaxman/vivarium_conic_calcium_supplementation
Modeling maternal calcium supplementation to reduce exposure to low birthweight / short gestation.
aflaxman/vivarium_conic_lsff
aflaxman/vivarium_conic_sam_comparison
aflaxman/vivarium_mslt_update
MSLT with Vivarium
aflaxman/vivarium_research
Documentation for working on vivarium research projects.
aflaxman/vivarium_research_nih_us_cvd
Research repository for CVD model