Pinned Repositories
biocommons.seqrepo
non-redundant, compressed, journalled, file-based storage for biological sequences
bioutils
bioutils provides some common tools and lookup tables used primarly by the hgvs and uta packages
buzzwordbingo
Generates HTML bingo cards from a list of terms.
FQRead
Python library for FASTQ file handling.
gitignore
A collection of useful .gitignore templates
hgvs
Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`
idutils
Small Python library to validate persistent identifiers used in scholarly communication.
mave_ga4gh
linkml representation of MAVE controlled vocabulary terms
metapub
Python toolkit for NCBI metadata (via eutils) and pubmed article text mining -- official primary repo.
miniconf
afrubin's Repositories
afrubin/FQRead
Python library for FASTQ file handling.
afrubin/mave_ga4gh
linkml representation of MAVE controlled vocabulary terms
afrubin/biocommons.seqrepo
non-redundant, compressed, journalled, file-based storage for biological sequences
afrubin/bioutils
bioutils provides some common tools and lookup tables used primarly by the hgvs and uta packages
afrubin/buzzwordbingo
Generates HTML bingo cards from a list of terms.
afrubin/gitignore
A collection of useful .gitignore templates
afrubin/hgvs
Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`
afrubin/idutils
Small Python library to validate persistent identifiers used in scholarly communication.
afrubin/metapub
Python toolkit for NCBI metadata (via eutils) and pubmed article text mining -- official primary repo.
afrubin/miniconf
afrubin/nixpkgs
Nix Packages collection
afrubin/PacRAT
Improving long-read barcode-variant mapping using multiple sequence alignment.
afrubin/ReducingVariantClassificationInequities
afrubin/regolith-i3
An unofficial fork of an unofficial fork (i3-gaps) of i3-wm.
afrubin/symposion
a Django project for conference websites
afrubin/uta
Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; available as a docker image
afrubin/va-spec
An information model for representing variant annotations.