aganezov
Husband, Son, Ph.D., Senior Genomic Applications Scientist @nanoporetech. I'm fascinated about everything, that has something unknown in it! Views are my own.
@nanoporetechCambridge, MA, USA
Pinned Repositories
algo_bioinf
bg
Breakpoint graph implementation in Python programming language
EnsemblePLInternal
EnsembleSV
A workflow for SV inference allosing for multiple sequencing technologies and methods
gos-asm
Multi-genemo gene order based assembler
java-samples
JetBrains GWU IDEA project with samples in Java
python-samples
Code samples in Python
RCK
RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes
CAMSA
CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
Jasmine
Jasmine: SV Merging Across Samples
aganezov's Repositories
aganezov/RCK
RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes
aganezov/EnsembleSV
A workflow for SV inference allosing for multiple sequencing technologies and methods
aganezov/bg
Breakpoint graph implementation in Python programming language
aganezov/gos-asm
Multi-genemo gene order based assembler
aganezov/java-samples
JetBrains GWU IDEA project with samples in Java
aganezov/algo_bioinf
aganezov/python-samples
Code samples in Python
aganezov/EnsemblePLInternal
aganezov/aganezov.github.io
Personal website for Sergey Aganezov, PhD
aganezov/B2_CIGARCO
CIGAR coordinate (re)mapper
aganezov/catfishq
Cat FASTQ files
aganezov/CEBAR
A suite for Comparative Evolutionary Biology and Ancestral Reconstruction
aganezov/cpython
The Python programming language
aganezov/cv
aganezov/fastai_course22
The fast.ai course notebooks
aganezov/gos
Python driven scaffolding tool for multiple genomes represented as fragments with oriented gene orders
aganezov/gos-ego
Ensemble gene order processor
aganezov/intellij-community
IntelliJ IDEA Community Edition
aganezov/Jasmine_utils
aganezov/juicebox
Software for visualizing data from Hi-C and other proximity mapping experiments
aganezov/kotlin-playgound
aganezov/kraken2
The second version of the Kraken taxonomic sequence classification system
aganezov/marshmallow
A lightweight library for converting complex objects to and from simple Python datatypes.
aganezov/networkx
Official NetworkX source code repository.
aganezov/pytorch-deep-learning
Materials for the Learn PyTorch for Deep Learning: Zero to Mastery course.
aganezov/RCK-pub-data
Clone- and haplotype specific cancer karyotypes inferred with RCK on 17 prostate cancer samples
aganezov/spring-demo
aganezov/T2T_1kgp_recall
aganezov/vcs-sample
aganezov/whatshap
Read-based phasing of genomic variants, also called haplotype assembly