Pinned Repositories
biblio-bibrecord
Data structures for recording bibliographic data
biblio-sniffmetadata
Ebook metadata reading
biblio.idscheme
Bibliographic identifiers including ISBNs, ISSNs and DOIs.
biblio.isbn
Handling and converting ISBNs
biblio.webquery
Retrieving bibliographic information from web services
bioscripts.convert
Biopython scripts for converting molecular sequences.
py-gsp
Generalized Sequence Pattern matching algorithm in Python
py-konval
Data validation & conversion for Python
redcaphelper
rst2beamer
Converting restructured text to the beamer presentation format for LaTeX
agapow's Repositories
agapow/redcaphelper
agapow/py-gsp
Generalized Sequence Pattern matching algorithm in Python
agapow/simpleredcapbuilder
A compact description for complex REDCap data dictionaries
agapow/agapow.github.io
Personal website (server)
agapow/subtypr
Patient subtyping for precision medicine
agapow/20171130-biolon-snakemake
Talk at bioinformatics.london on snakemake, written with rst2pdf
agapow/agapow.github.io.old
My personal website
agapow/bcryptwrapper
Programmatically calling bcrypt commandline utility
agapow/binfie-london-jobs
A scrapper to gather bioinformatic jobs in London
agapow/biopy-isatab
Python parser for ISAtab, a biological file format for experimental metadata
agapow/brew
:beer: The missing package manager for OS X
agapow/cookiecutter-pypackage-minimal
A minimal template for python packages
agapow/datasan
A general framework for sanitizing datasets
agapow/egas
agapow/euclids-ci-dev-doc
Development documentation for the EUCLIDS cyberinfrastructure
agapow/euclids-redcap-db-schema
Expanded schema for the EUCLIDS REDCap databases using simpleredcapbuilder
agapow/find-cassettes
Snakemake pipeline using the mcda approach to identify motif cassettes
agapow/genome-subway-py
Experiment in Processing, visualising genomes in subway diagram
agapow/graph4ipy
Visualising graphs in IPython
agapow/memeparse
Parsing Meme results files for motif information (if you're too dumb to have noticed that BioPython has a module for this)
agapow/ml-and-cancer-lecture
Lecture on machine learning for cancer research
agapow/multilocus
Analysis of multi-locus population genetic data
agapow/pandoc-markdown-presentations
Writing (various format) presentations in markdown, via pandoc: working examples
agapow/pycaphelper
Utilities for working with PyCap (which itself works with REDCap)
agapow/simpletest
agapow/smartr
agapow/study-python
Odds and ends, notes and experiments with Python
agapow/subcatgeory-an
A fork of the subcategory plugin for pelican
agapow/tacs-ms
Analysis and manuscript for analysis of asthma TACs
agapow/transmart-docs
Porting the tranSMArt documentation to a saner system