aggreen

Computational biology. Asst. Prof, UMass Amherst CICS. https://groups.cs.umass.edu/sage/

Amherst

Pinned Repositories

EVcouplings
Evolutionary couplings from protein and RNA sequence alignments
Language:Jupyter Notebook11
MTB-CNN
CNN models for antibiotic resistance prediction in M. tuberculosis genomes. From Green & Yoon et al (forthcoming)
Language:Jupyter Notebook17 2 610
SNPPar
Parallel/Homoplasic SNP Finder
Language:Python00
SNPPar
Parallel/Homoplasic SNP Finder
Language:Python16 3 114
EVcouplings
Evolutionary couplings from protein and RNA sequence alignments
Language:Jupyter Notebook224 25 18474
DependentMutations
Language:Jupyter Notebook2 4 00
GenotypeTools
Python code for reading, writing, and analyzing genotypes in various file formats
Language:Python1 4 00

aggreen's Repositories

aggreen/MTB-CNN
CNN models for antibiotic resistance prediction in M. tuberculosis genomes. From Green & Yoon et al (forthcoming)
Language:Jupyter Notebook17 2 610
aggreen/EVcouplings
Evolutionary couplings from protein and RNA sequence alignments
Language:Jupyter Notebook11
aggreen/SNPPar
Parallel/Homoplasic SNP Finder
Language:Python00