Pinned Repositories
aghaeifar.github.io
AMaSh
Advacned Magnetic field Shimming
bet2
MATLAB mex interface and Python wrapper for standalone Brain Extraction Tool (bet2),
Biot-Savart
Simulation of Biot-Savart law - Analytical solution to calculate magnetic field of an arbitrarily shaped coil. MATLAB and Python interface are provided.
optimized_multi_coil
Optimization of multi-coil shim setup for human brain shimming. Please cite our paper if you used the code and found it useful: https://doi.org/10.1002/mrm.27929.
recoMRD
Python scripts to read and reconstruct ismrmrd (mrd) format
RecoTwix
scripts for reconstruction of MRI data from Siemens rawdata files (twix)
SpinWalk
SpinWalk, a framework for Monte-Carlo simulation to model spins random walk within a microvascular network. SpinWalk can be also employed to simulate diffusion in a microstructure substrates.
TurboBloch
Implementation of Bloch equation simulator for magnetic resonance imaging (MRI) sequences
twixtools
python file reader/writer for Siemens MRI raw data + compression utility
aghaeifar's Repositories
aghaeifar/optimized_multi_coil
Optimization of multi-coil shim setup for human brain shimming. Please cite our paper if you used the code and found it useful: https://doi.org/10.1002/mrm.27929.
aghaeifar/recoMRD
Python scripts to read and reconstruct ismrmrd (mrd) format
aghaeifar/SpinWalk
SpinWalk, a framework for Monte-Carlo simulation to model spins random walk within a microvascular network. SpinWalk can be also employed to simulate diffusion in a microstructure substrates.
aghaeifar/AMaSh
Advacned Magnetic field Shimming
aghaeifar/bet2
MATLAB mex interface and Python wrapper for standalone Brain Extraction Tool (bet2),
aghaeifar/RecoTwix
scripts for reconstruction of MRI data from Siemens rawdata files (twix)
aghaeifar/aghaeifar.github.io
aghaeifar/Biot-Savart
Simulation of Biot-Savart law - Analytical solution to calculate magnetic field of an arbitrarily shaped coil. MATLAB and Python interface are provided.
aghaeifar/TurboBloch
Implementation of Bloch equation simulator for magnetic resonance imaging (MRI) sequences
aghaeifar/twixtools
python file reader/writer for Siemens MRI raw data + compression utility
aghaeifar/vini
viewer for MRI data & numpy arrays