ciml-summer-institute-2023
- A full catalog of all our trainings at SDSC can be found here.
- Description
- Agenda
- Instructors
- All presentations are located in this repository.
This repository contains all the presentations and training material used for the CIML Summer Institute. To work with the material, remember to CLONE this repo.
All times are in Pacific time.
| TIME (Pacific time) | TOPIC | PRESENTER |
|---|---|---|
| 9:00 AM - 9:15 AM | 1.1 Welcome & Orientation | |
| 9:15 AM – 9:45 AM | 1.2 Accounts, Login, Environment, Running Jobs and Logging into Expanse User Portal | |
| 9:45 AM – 10:30 AM | Q&A, Wrap-up | All |
| TIME (Pacific time) | TOPIC | PRESENTER |
|---|---|---|
| 8:00 AM – 8:30 AM | Light Breakfast & Check-in | |
| 8:30 AM – 9:30 AM | 2.1 Welcome and Introductions | Mary Thomas |
| 9:30 AM - 9:40 AM | Break | |
| 9:40 AM – 11:00 AM | 2.2 Parallel Computing Concepts | Robert Sinkovits |
| 11:00 AM – 11:10 PM | Break | |
| 11:10 AM – 12:30 PM | 2.3 Running Batch Jobs on SDSC Systems | Marty Kandes |
| 12:30 PM – 1:30 PM | Lunch | |
| 1:30 PM - 2:50 PM | 2.4 Data Management and File Systems | Mahidhar Tatineni |
| 2:50 PM – 3:00 PM | Break | |
| 3:00 PM – 4:30 PM | 2.5 GPU Computing - Hardware architecture and software infrastructure | Andreas Goetz |
| 4:30 PM – 5:00 PM | Q&A, Wrap-up | All |
| 5:00 PM – 7:00 PM | Evening Reception - 15th Floor, the Village |
| TIME (Pacific time) | TOPIC | PRESENTER |
|---|---|---|
| 8:00 AM – 8:30 AM | Light Breakfast & Check-in | |
| 8:30 AM – 8:40 AM | 3.1 Quick Welcome | |
| 8:40 AM – 10:00 AM | 3.2 Introduction to Singularity: Containers for Scientific and High-Performance Computing |
Marty Kandes |
| 10:00 AM – 10:10 AM | Break | |
| 10:10 AM – 12:10 PM | 3.3 CONDA Environments and Jupyter Notebook on Expanse: Scalable & Reproducible Data Exploration and ML | Peter Rose |
| 12:10 PM – 1:10 PM | Lunch | |
| 1:10 PM – 1:55 PM | 3.4 Machine Learning (ML) Overview | Mai Nguyen |
| 1:55 PM – 2:25 PM | 3.5 R on HPC Demo | Paul Rodriguez |
| 2:25 PM – 2:35 PM | Break | |
| 2:35 PM – 4:35 PM | 3.6 Spark | Mai Nguyen |
| 4:35 PM – 5:00 PM | Q&A, Wrap-up | All |
| TIME (Pacific time) | TOPIC | PRESENTER |
|---|---|---|
| 8:00 AM – 8:30 AM | Light Breakfast & Check-in | |
| 8:30 AM – 8:40 AM | 4.1 Quick Welcome | |
| 8:40 AM – 10:00 AM | 4.2 Introduction to Neural Networks and Convolution Neural Networks | Paul Rodriguez |
| 10:00 AM – 10:10 AM | Break | |
| 10:10 AM – 11:30 AM | 4.3 Practical Guidelines for Training Deep Learning on HPC | Paul Rodriguez |
| 11:30 PM – 12:30 PM | Lunch | |
| 12:30 PM – 1:15 PM | 4.4 Deep Learning Layers and Architectures | Mai Nguyen |
| 1:15 PM – 1:25 PM | Break | |
| 1:25 PM – 2:55 PM | 4.5 Deep Learning Transfer Learning | Mai Nguyen |
| 2:55 PM - 3:05 PM | Break | |
| 3:05 PM – 4:35 PM | 4.6 Deep Learning – Special Connections | Paul Rodriguez |
| 4:35 PM – 5:00 PM | Q&A, wrap-up |
| Name | Title | |
|---|---|---|
| Andreas Goetz, Ph.D. | Research Scientist, Principal Investigator | awgoetz at ucsd.edu |
| Mai Nguyen Ph.D. | Lead for Data Analytics | mhnguyen at ucsd.edu |
| Mahidhar Tatineni, Ph.D. | Director for User Support Services | mtatineni at ucsd.edu |
| Marty Kandes Ph.D. | Computational and Data Science Research Specialist | mkandes at ucsd.edu |
| Mary Thomas Ph.D. | Director of CIML, Computational Data Scientist, HPC Trainer | mpthomas at ucsd.edu |
| Paul Rodriguez Ph.D. | Computational Data Scientist | p4rodriguez at ucsd.edu |
| Peter Rose Ph.D. | Director for Structural Bioinformatics Laboratory | pwrose at ucsd.edu |
| Robert Sinkovits Ph.D. | Director of Education and Training | rssinkovits at ucsd.edu |