intMEMOIR is a synthetic biology experimental technology that enables recording mutations in DNA. Here we perform inference of lineage relationships from the intMEMOIR reaout.
source("memoirReconstruction.R")
reconstruction = reconstructLineage(ground_phylo = ground_truth,mu = mu, alpha = alpha , return_tree = T )
Pull requests are welcome. For major changes, please open an issue first to discuss what you would like to change.
Please make sure to update tests as appropriate.