/GonzalezReymundez2021

This repository contains code to replicate examples and results in Gonzalez-Reymundez et al. 2021

Primary LanguageR

Supplementary Information for Gonzalez-Reymundez et al. (2021).

This package contains supplementary material for "MOSS: Multi-omic integration with Sparse Value Decomposition"

Agustin Gonzalez-Reymundez, Alexander Grueneberg, Guanqi Lu, Filipe Couto Alves, Gonzalo Rincon, Ana I Vazquez.

Bioinformatics (2022), btac179, https://doi.org/10.1093/bioinformatics/btac179

The following sections contain the codes needed to generate and plot the results shown in the article.

1) Installing MOSS and required packages.

2) Example of usage and syntaxis.

3) Statistical and algorithmic details.

4) Analytical performance.

4.1 - Generate results

4.2 - Generate Figure 1-A

5) Computational performance.

5.1 - Generate results

5.2 - Generate Figure 1-B

6) Analytical Performance (Data used in Gonzalez-Reymundez and Vazquez, 2020).

6.1 - Get data

6.2 - Generate results

6.3 - Generate Figure 1-C