/demultiplex_fastq

Simple, fast and memory efficient demultiplexer for FASTQ sequencing files

Primary LanguageCMIT LicenseMIT

demultiplex_fastq

Simple, fast and memory efficient demultiplexer for FASTQ sequencing files written by Andy Hauser andreas.hauser@LMU.de

Usage

Usage: demultiplex_fastq [-p PREFIX] --r1 FASTQ1 [--r2 FASTQ2] --i1 FASTQ_INDEX [--i2 FASTQ_INDEX2] -b BARCODE1,BARCODE2[,...]

Example

$ demultiplex_fastq --r1 lane8_R1.fastq.gz --i1 lane8_R2.fastq.gz -b ACACGC,GGTATA