aherbert
Research scientist developing image analysis software for the Genome Damage and Stability Centre, University of Sussex.
University of SussexBrighton, UK
Pinned Repositories
3D_Viewer
gdsc
GDSC ImageJ Plugins
gdsc-analytics
Use the Google Analytics Measurement Protocol to collect usage information from a Java application
gdsc-core
Contains core code used by the GDSC ImageJ Plugins and GDSC SMLM ImageJ Plugins
gdsc-smlm
GDSC Single Molecule Light Microscopy ImageJ Plugins
gdsc-test
Contains code for use with the JUnit test framework
omero-archiving
Uses the OMERO python API to tag images for archiving and move underlying image files to an archive
omero-user-scripts
Plugins for OMERO
openmicroscopy
OME (Open Microscopy Environment) develops open-source software and data format standards for the storage and manipulation of biological light microscopy data. A joint project between universities, research establishments and industry in Europe and the USA, OME has over 20 active researchers with strong links to the microscopy community. Funded by private and public research grants, OME has been a major force on the international microscopy stage since 2000.
commons-rng
Apache Commons RNG (Pseudo-random number generators)
aherbert's Repositories
aherbert/gdsc-smlm
GDSC Single Molecule Light Microscopy ImageJ Plugins
aherbert/gdsc
GDSC ImageJ Plugins
aherbert/omero-user-scripts
Plugins for OMERO
aherbert/gdsc-analytics
Use the Google Analytics Measurement Protocol to collect usage information from a Java application
aherbert/gdsc-core
Contains core code used by the GDSC ImageJ Plugins and GDSC SMLM ImageJ Plugins
aherbert/omero-archiving
Uses the OMERO python API to tag images for archiving and move underlying image files to an archive
aherbert/gdsc-test
Contains code for use with the JUnit test framework
aherbert/bioformats
Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.
aherbert/commons-csv
Mirror of Apache Commons CSV
aherbert/commons-lang
Mirror of Apache Commons Lang
aherbert/commons-math
Mirror of Apache Commons Math
aherbert/commons-numbers
Mirror of Apache Commons Complex Numbers
aherbert/commons-rng
Mirror of Apache Commons RNG
aherbert/commons-statistics
Mirror of Apache Commons Statistics
aherbert/commons-text
Mirror of Apache Commons Text
aherbert/distillCellSegTrack
Distilling Cellpose into more efficient models
aherbert/docker-example-omero
OMERO Docker compose example
aherbert/ExTrack
ExTrack MLE for diffusive noisy single-particle tracks
aherbert/extrack-scripts
Contains scripts to use the ExTrack python library
aherbert/fastutil
fastutil extends the Java™ Collections Framework by providing type-specific maps, sets, lists and queues.
aherbert/gdsc-ctc-plugins
Fiji plugins providing CTC measures for quantitative evaluation of biomedical tracking in general.
aherbert/gdsc-examples
Examples of use of the GDSC projects developed for ImageJ
aherbert/gdsc-ij-parent
Parent for the GDSC ImageJ plugin projects
aherbert/gdsc-smlm-ij-example-plugin
Example project for an ImageJ plugin using the GDSC SMLM library
aherbert/java-unsigned-integers
Optimized, immutable Java implementations of fixed-width, unsigned integers.
aherbert/mastodon-ctc
Mastodon plugins to import from and export to (not only) the CellTrackingChallenge format
aherbert/maven-compiler-plugin
Apache Maven Compiler Plugin
aherbert/numpy
The fundamental package for scientific computing with Python.
aherbert/Omero_Screen
aherbert/scipy
SciPy library main repository