ahl27

Doctoral Candidate @DBMI-Pitt. I build tools for large scale comparative phylogenetics. I also help maintain Biostrings.

University of PittsburghPittsburgh, PA

Pinned Repositories

65C02Emulator
Emulator for a 65c02 CPU written in C.
Language:C21
CompGenomicsBioc2022
Workshop to be given at Bioconductor 2022. We'll be going over conducting comparative genomics analyses using tools in `SynExtend` and `DECIPHER`.
Language:Dockerfile3 1 11
dendutils
Additional functionality for R dendrogram objects
Language:C00
discordbots
Scripts for bots running on discord servers
Language:Python20
findPapers
Find academic papers on PubMed and cluster by similarity.
Language:Python10
froth
froth is FORTH for R!
Language:R30
machineRy
Machine learning models for R written from scratch
Language:C00
new_dendrapply
New implementation of `dendrapply` for R
Language:R3 2 00
SynExtend
Tools for working with synteny objects
Language:R00
Biostrings
Efficient manipulation of biological strings
Language:R58 16 8216

ahl27's Repositories

ahl27/CompGenomicsBioc2022
Workshop to be given at Bioconductor 2022. We'll be going over conducting comparative genomics analyses using tools in `SynExtend` and `DECIPHER`.
Language:Dockerfile3 1 11
ahl27/froth
froth is FORTH for R!
Language:R30
ahl27/new_dendrapply
New implementation of `dendrapply` for R
Language:R3 2 00
ahl27/65C02Emulator
Emulator for a 65c02 CPU written in C.
Language:C21
ahl27/discordbots
Scripts for bots running on discord servers
Language:Python20
ahl27/findPapers
Find academic papers on PubMed and cluster by similarity.
Language:Python10
ahl27/ahl27.github.io
Personal website page
Language:JavaScript00
ahl27/dendutils
Additional functionality for R dendrogram objects
Language:C00
ahl27/FORTH
FORTH interpreter from scratch for the 65C02 (maybe 65C816 down the line). I blog about this project at https://www.ahl27.com/blog/
Language:Assembly00
ahl27/machineRy
Machine learning models for R written from scratch
Language:C00
ahl27/SYNCIPHER-app
Web App interface for comparative genomics using DECIPHER and SynExtend
Language:R00
ahl27/SynExtend
Tools for working with synteny objects
Language:R00
ahl27/ahl27
GitHub Profile Repo
ahl27/Biostrings
Efficient manipulation of biological strings
Language:R
ahl27/biostrings-isc-proposal
Proposal to work on Biostrings with R Consortium ISC Grant
Language:Shell
ahl27/biostrings-isc-proposal-2024
R Consortium ISC Proposal
Language:Shell
ahl27/GitIssueAnalyzer
Python script to analyze and cluster issues from a given repo
Language:Python
ahl27/intelligence
AI@UCF's [Science of] Intelligence Group (IG) meetings, categorized by semesters
ahl27/mangosbot-addon
WoW UI Addon for mangosbot
ahl27/ModernCBookClub
Language:C
ahl27/OSGDiscordStatus
Bot to check status of jobs on OSG, and then send update messages
Language:Python
ahl27/OtherTutorials
Introductory tutorial for the mathematical underpinnings and computational implementations of common methods for phylogenetic analysis. Available for free at https://ahl27.com/IntroPhylogenetics
ahl27/r-source
Read-only mirror of R source code from https://svn.r-project.org/R/, updated hourly. See the build instructions on the wiki page.
ahl27/r-svn-mirror
Mirror of the R svn with CI for testing patches
Language:R
ahl27/R_Patches
Things I've done or am working on for base R
Language:R
ahl27/service-workbench-on-aws
A platform that provides researchers with one-click access to collaborative workspace environments operating across teams, universities, and datasets while enabling university IT stakeholders to manage, monitor, and control spending, apply security best practices, and comply with corporate governance.
Language:JavaScript
ahl27/spp-classics-cmangos
SPP Classics repack with ike3 playerbots. Based on cmangos. Supports 1.12, 2.4.3, 3.3.5. Check "Releases" for installer
ahl27/video-library
Language:Python
ahl27/zmk
ZMK Firmware Repository
ahl27/zmk-config