Pinned Repositories
oncoPrintr
R package to generate onco prints of genomic and clinical data of patient cohorts
CSC_CH_Paper_Code
primerDesign
code for dPCR primer design based on delly fusions
d3examples
Examples of interactive graphics using d3.js
iAnnotateSV
iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Generation DNA sequencing data.
oncoprint
Create beautilful oncoprints in R
oncotree
oneliners
Useful bash one-liners for bioinformatics.
poole
The Jekyll Butler.
pysamstats
A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM or BAM file.
ahmetz's Repositories
ahmetz/oncoPrintr
R package to generate onco prints of genomic and clinical data of patient cohorts
ahmetz/oneliners
Useful bash one-liners for bioinformatics.
ahmetz/CSC_CH_Paper_Code
ahmetz/oncotree
ahmetz/sciclone
An R package for inferring the subclonal architecture of tumors
ahmetz/pysamstats
A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM or BAM file.
ahmetz/poole
The Jekyll Butler.
ahmetz/vcf2maf
Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
ahmetz/iAnnotateSV
iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Generation DNA sequencing data.
ahmetz/oncoprint
Create beautilful oncoprints in R
ahmetz/r-graph-catalog
All graphs in “Creating More Effective Graphs”, made with R package ggplot2.
ahmetz/primerDesign
code for dPCR primer design based on delly fusions
ahmetz/d3examples
Examples of interactive graphics using d3.js
ahmetz/R.scripts
R scripts in development
ahmetz/RNAseqPipeline
bash pipeline for RNAseq data analysis