Pinned Repositories
ahvigil.github.io
bamUtil
basespace-downloader
A simple command line utility for downloading run/project files stored on Illumina's BaseSpace platform
celery
Distributed Task Queue (development branch)
cpython
The Python programming language
demonfire
DICOM image registration and segmentation project using VTK
featuR
R utilities for dealing with FEATURE data
randomForest
Classification and regression based on a forest of trees using random inputs.
nf-test
Simple test framework for Nextflow pipelines
modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
ahvigil's Repositories
ahvigil/demonfire
DICOM image registration and segmentation project using VTK
ahvigil/pandr
R compatible pandas dataframe serialization
ahvigil/randomForest
Classification and regression based on a forest of trees using random inputs.
ahvigil/ahvigil.github.io
ahvigil/bamUtil
ahvigil/celery
Distributed Task Queue (development branch)
ahvigil/cpython
The Python programming language
ahvigil/featuR
R utilities for dealing with FEATURE data
ahvigil/forcebalance
Systematic force field optimization.
ahvigil/homebrew-cask
A CLI workflow for the administration of Mac applications distributed as binaries
ahvigil/incubator-airflow
Apache Airflow (Incubating)
ahvigil/ipython
Official repository for IPython itself. Other repos in the IPython organization contain things like the website, documentation builds, etc.
ahvigil/kombu
Messaging library for Python.
ahvigil/leaves
Tools for looking at Random Forests and other tree based modeling approaches
ahvigil/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
ahvigil/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
ahvigil/ncls
The Nested Containment List for Python. Basically a static interval-tree that is silly fast for both construction and lookups.
ahvigil/nextflow
A DSL for data-driven computational pipelines
ahvigil/nf-aggregate
Pipeline to aggregate pertinent metrics across pipeline runs on the Seqera Platform (beta)
ahvigil/nf-test
Simple test framework for Nextflow pipelines
ahvigil/oauth2
Go OAuth2
ahvigil/poetry
Python packaging and dependency management made easy
ahvigil/pysam
Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
ahvigil/pytest-workflow
Configure workflow/pipeline tests using yaml files.
ahvigil/rfcv
Cross validation code for random forest
ahvigil/ruptures
ruptures: change point detection in Python
ahvigil/scandir
Better directory iterator and faster os.walk(), now in the Python 3.5 stdlib
ahvigil/sketches
random drawings
ahvigil/toys
Small scripts and demos written by me
ahvigil/varSelRF