ahwanpandey

ahwanpandey's Stars

• brentp/smoove

  structural variant calling and genotyping with existing tools, but, smoothly.

  Language:Go23021

• atks/vt

  A tool set for short variant discovery in genetic sequence data.

  Language:C1903

• mskcc/facets

  Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.

  Language:R13565

• nygenome/lancet

  Microassembly based somatic variant caller for NGS data

  Language:C15333

• PoisonAlien/maftools

  Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.

  Language:R440217

• PapenfussLab/gridss

  GRIDSS: the Genomic Rearrangement IDentification Software Suite

  Language:Java25073

• arq5x/lumpy-sv

  lumpy: a general probabilistic framework for structural variant discovery

  Language:C309118

• Illumina/manta

  Structural variant and indel caller for mapped sequencing data

  Language:C++397150

• broadinstitute/gatk

  Official code repository for GATK versions 4 and up

  Language:Java1.7k587

• luntergroup/octopus

  Bayesian haplotype-based mutation calling

  Language:C++30238

• broadgsa/gatk

  Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk repository

  Language:Java295223