In this repository we provide extensive documentation to facilitate the understanding of the problem, its context and how the hackathon contributions will be evaluated. We furthermore provide the nessessary code to run the evaluation suite used to generate the quantitative evaluation metric used to assess the hackathon contributions. The content and structure of the repo is given by the following
.
├── README.md
├── cellprofiler_pipelines
│ ├── Adipocyte_pipeline_20x_ver2.cpproj : Cell profiler pipe line to generate image features for 20x images
│ ├── Adipocyte_pipeline_40x_ver1.cpproj : Cell profiler pipe line to generate image features for 40x images
│ └── Adipocyte_pipeline_60x_ver1.cpproj : Cell profiler pipe line to generate image features for 60x images
│ ├── README.md
│ └── cp_pipeline.png
├── documentation
│ ├── README.md
│ ├── dataset\ description.pdf : Description of data set from the call
│ ├── evaluation_criteria_hackathon.pdf : Description of all evaluation metrics and how they are combined into a final metric
│ ├── problem_formulation_with_logos.pdf : Problem formulation from the call
│ ├── report_template.docx : Template detailing the expected content of the project report (.docx)
│ └── report_template.pdf : Template detailing the expected content of the project report (.pdf)
└── evaluation_code
├── README.md
├── evaluation_pipe_line.PNG
└── hackathon_evaluation_metrics.ipynb : code to run the evaluation pipe line for the quantitative evaluation metric
For more detailed information about the content of each folder, please see the corresponding readme file.