Pinned Repositories
awesome-single-cell
List of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
nextflow
A DSL for data-driven computational pipelines
scrublet
Detect doublets in single-cell RNA-seq data
monocle3
bbi-sci
bbi-dmux
bedtools
A powerful toolset for genome arithmetic.
bedtools2
A powerful toolset for genome arithmetic.
bowtie
An ultrafast memory-efficient short read aligner
bowtie2
A fast and sensitive gapped read aligner
aishwaryagogate's Repositories
aishwaryagogate/digest-101
Code archive
aishwaryagogate/nextflow
A DSL for data-driven computational pipelines
aishwaryagogate/scrublet
Detect doublets in single-cell RNA-seq data
aishwaryagogate/samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
aishwaryagogate/awesome-single-cell
List of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
aishwaryagogate/bowtie
An ultrafast memory-efficient short read aligner
aishwaryagogate/STAR
RNA-seq aligner
aishwaryagogate/bwa
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
aishwaryagogate/bedtools2
A powerful toolset for genome arithmetic.
aishwaryagogate/bowtie2
A fast and sensitive gapped read aligner
aishwaryagogate/bedtools
A powerful toolset for genome arithmetic.