Pinned Repositories
ADHiW
ADHiW
ajandria
AWD
BroadIS
Erasmus_UP
futuriandge
This is a personal project focused on creating uniformal pipeline for processing RNA-seq data with the end goal to create a .Rdata object which can be imported into R/Shiny app for downstream analysis and hypothesis testing.
r-shiny-pca-explorer
r-shiny-volcano-viewer
workflows-scrna
wts-ae-mt-rem-nf
ajandria's Repositories
ajandria/r-shiny-volcano-viewer
ajandria/futuriandge
This is a personal project focused on creating uniformal pipeline for processing RNA-seq data with the end goal to create a .Rdata object which can be imported into R/Shiny app for downstream analysis and hypothesis testing.
ajandria/r-shiny-pca-explorer
ajandria/workflows-scrna
ajandria/wts-ae-mt-rem-nf
ajandria/ajandria
ajandria/bioconda-recipes
Conda recipes for the bioconda channel.
ajandria/CellBender
CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.
ajandria/configs
Config files used to define parameters specific to compute environments at different Institutions
ajandria/fetchngs
Pipeline to fetch metadata and raw FastQ files from public databases
ajandria/futurian-explorer
ajandria/futuriandgeDownstream
ajandria/genotyping-array-qc
Nextflow pipeline for quality control of genotyping data based on arrays.
ajandria/genotyping-qc-pipeline
Scripts and General Pipeline for QC-ing genotyping data
ajandria/hlme-to-flexmix
ajandria/hosting
ajandria/markers
ajandria/mobit-integra
ajandria/MOBIT_ion_channels_upstream
ajandria/multi-package-containers
Testing building mulled containers for multi-requirement tools.
ajandria/OlinkRPackage
Olink R package: A collection of functions to facilitate analysis of proteomic data from Olink. The goal of this package is to help users extract biological insights from proteomic data run on the Olink platform.
ajandria/pysradb
Package for fetching metadata and downloading data from SRA/ENA/GEO
ajandria/r-shiny-correlation-matrix
ajandria/r-shiny-dendrogram-sketcher
ajandria/r-shiny-dge-explorer
ajandria/r-shiny-heatmapper
ajandria/r-shiny-lolipopper
ajandria/test-datasets
Test data to be used for automated testing with the nf-core pipelines
ajandria/testpipeline
test
ajandria/workshop-scRNAseq
Single cell RNA sequencing analysis course