/Psylvestris_DataPaper

Processing of Illumina MiSeq sequencing reads (16S V3-V4 and ITS2) from the root endosphere and rhizosphere of decline-affected and asymptomatic Pinus sylvestris trees

Primary LanguageTeXMIT LicenseMIT

DataPaper: Root-associated microbiota of decline-affected and asymptomatic Pinus sylvestris trees

DOI

This repository contains scripts and analysis used for the datapaper "Root-associated microbiota of decline-affected and asymptomatic Pinus sylvestris trees". This dataset was used for the paper Lasa et al. 2024.

Website

You can see the website of the repo at: https://anitalasa.github.io/Psylvestris_DataPaper

Acknowledgements

This study was funded by:

  • MICINN through European Regional Development Fund SUMHAL, LIFEWATCH-2019-09-CSIC-13, POPE 2014-2020. More info about the SUMHAL project (Sustainability for Mediterranean Hotspots in Andalusia integrating LifeWatch ERIC).

  • Antonio J. Pérez-Luque was funded by MCIN/AEI/10.13039/501100011033 and by “European Union NextGenerationEU/PRTR” with a “Juan de la Cierva” fellowship programme (Grant JDC2022-050056-I)

How to cite:

Data Paper:

Building, still unpublished

Repository:

Ana V. Lasa & Antonio J. Pérez-Luque (2024) Code repository of the DataPaper: Root-associated microbiota of decline-affected and asymptomatic Pinus sylvestris trees. http://doi.org/10.5281/zenodo.13711241

Main paper:

Lasa, A.V.; Fernández-González, A.J.; Villadas, P.J.; Mercado-Blanco, J.; Pérez-Luque, A.J.; Fernández-López, M. (2024). Mediterranean pine forest decline: a matter of root-associated microbiota and climate change. Science of The Total Environment 926: 171858. https://doi.org/10.1016/j.scitotenv.2024.171858