BINF634 Homework

Bioinformatics Homework in Perl.

Author: Alexander Smith

Requirements

Have Perl 5 installed (Ew, Perl).

Homework 1:

homework/ex4.3.pl
homework/ex4.4.pl
homework/ex4.5.pl
homework/ex5.2.pl
homework/ex5.4.pl
homework/ex5.6.pl

Homework 2:

homework/ex6.1.pl
homework/ex6.2.pl

Homework 3:

homework/ex7.2.pl
homework/ex7.3.pl

Homework 4:

homework/ex10.3.pl
homework/ex10.6.pl

Homework 5:

homework/ex11.1.pl
homework/ex11.2.pl

Homework 6:

homework/ex12.4.md
homework/ex12.6.py # Using Biopython!
homework/ex12.6.pl # Never got Bioperl installed :(

Lab 1:

labs/lab1.md

Lab 2:

labs/lab2.md

Just run the test scripts.

$ tests/test-hw1.sh
$ tests/test-hw2.sh
$ tests/test-hw3.sh
$ tests/test-hw4.sh

The test scripts also provide examples for running each solution.

Source code for homework solutions is found in the src/ directory.

$ git archive --format tgz --prefix asmitl-binf634-homework-x.y.z/ HEAD \
    > asmitl-binf634-homework-x.y.z.tar.gz

$ git archive --format tgz --prefix asmitl-binf634-homework-x.y.z/ HEAD \
    | ssh me@host "tar xzv"