Pinned Repositories
QuIN
QuIN (Query tool for Interaction Networks, available at quin.jax.org) is a tool for visualizing, annotating, and querying chromatin interactions derived from technologies such as ChIA-PET or HiC.
TuttesGraphDrawingImpl
Computational Geometry project.
AMULET
A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.
CoRE-ATAC
COVID-RSV-Infants
Code repository for the COVID/RSV Infant Project.
OverlapCounter
MIT licensed code for counting overlaps from snATAC-seq data.
snATAC_AlignmentAggregator
Aggregates alignments for single cell clusters to apply methods for bulk data. Also adjusts reads for the 9bp overhang.
snATACClusteringPipeline
Pipeline for obtaining clusters from snATAC-seq data.
snATACClusteringTools
Java methods for processing snATAC-seq data.
ajt986's Repositories
ajt986/QuIN
QuIN (Query tool for Interaction Networks, available at quin.jax.org) is a tool for visualizing, annotating, and querying chromatin interactions derived from technologies such as ChIA-PET or HiC.
ajt986/TuttesGraphDrawingImpl
Computational Geometry project.