Pinned Repositories
Complete-Striped-Smith-Waterman-Library
Hadoop-BAM
Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework with the Picard SAM JDK, and command line tools similar to SAMtools.
hampi
Automatically exported from code.google.com/p/hampi
jbwa
Java Bindings (JNI) for bwa
gamgee
A C++14 library for NGS data formats
gatk
Official code repository for GATK versions 4 and up
gatk-protected
Obsolete/Legacy GATK repository -- go to https://github.com/broadinstitute/gatk instead
picard
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
Complete-Striped-Smith-Waterman-Library
htsjdk
A Java API for high-throughput sequencing data (HTS) formats.
akiezun's Repositories
akiezun/hampi
Automatically exported from code.google.com/p/hampi
akiezun/Complete-Striped-Smith-Waterman-Library
akiezun/Hadoop-BAM
Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework with the Picard SAM JDK, and command line tools similar to SAMtools.
akiezun/jbwa
Java Bindings (JNI) for bwa