Pinned Repositories
bih-cluster
BIH Cluster Wiki
dark-matter
Virus discovery
ffpopsim
FFPopSim is a collection of C++ classes and a Python interface for efficient simulation of large populations, in particular when the product of mutation rate and population size is larger than one. It consists of one library for individual-based simulations, and a complementary one for simulation of the entire genotype distribution. The latter is coded efficiently using Fast-Fourier Transforms to speed up recombination operations.
ncov
Nextstrain build for novel coronavirus (nCoV)
nCoV-narratives-greek
panel-filtering
translations
Repo for translations of nextstrain website and COVID-19 weekly situation reports.
pangolin-data
Repository for storing latest model, protobuf, designation hash and alias files for pangolin assignments
treetime
Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction
ncov
Nextstrain build for novel coronavirus SARS-CoV-2
akifoss's Repositories
akifoss/bih-cluster
BIH Cluster Wiki
akifoss/dark-matter
Virus discovery
akifoss/ffpopsim
FFPopSim is a collection of C++ classes and a Python interface for efficient simulation of large populations, in particular when the product of mutation rate and population size is larger than one. It consists of one library for individual-based simulations, and a complementary one for simulation of the entire genotype distribution. The latter is coded efficiently using Fast-Fourier Transforms to speed up recombination operations.
akifoss/ncov
Nextstrain build for novel coronavirus (nCoV)
akifoss/nCoV-narratives-greek
akifoss/panel-filtering
akifoss/translations
Repo for translations of nextstrain website and COVID-19 weekly situation reports.