Pinned Repositories
BO-DTI
Scripts for "Efficient Hyperparameter Optimization by Using Bayesian Optimization for Drug-Target Interaction Prediction"
cycpeptmp
Implementation of CycPeptMP, an accurate and efficient model for predicting the membrane permeability of cyclic peptides
cycpeptppb
ghostz
GHOSTZ: A high-speed homology search tool to detect remote homologues like BLAST using database subsequence clustering.
ghostz-gpu
A GPU-accelerated sequence homology search tool using database subsequence clustering
MEGADOCK
An ultra-high-performance protein-protein docking for heterogeneous supercomputers
NRLMFb
NRLMFβ: Bata-distribution-rescored Neighborhood Regularized Logistic Matrix Factorization for Improving Performance of Drug–Target Interaction Prediction
PAPPION
PAPPION: Fast and Accurate Protein-Protein Interaction Predictions by Structural Profiling and Stacking
restretto
REstretto (REuse of sub-STRuctures as an Effective Technique for protein-ligand docking TOol): An virtual screening-oriented protein-ligand docking tool with reuse of fragments
SPDRank
Learning-to-Rank Technique based on Ignoring Meaningless Ranking Orders between Compounds
Akiyama Lab.'s Repositories
akiyamalab/MEGADOCK
An ultra-high-performance protein-protein docking for heterogeneous supercomputers
akiyamalab/NRLMFb
NRLMFβ: Bata-distribution-rescored Neighborhood Regularized Logistic Matrix Factorization for Improving Performance of Drug–Target Interaction Prediction
akiyamalab/ghostz-gpu
A GPU-accelerated sequence homology search tool using database subsequence clustering
akiyamalab/cycpeptmp
Implementation of CycPeptMP, an accurate and efficient model for predicting the membrane permeability of cyclic peptides
akiyamalab/BO-DTI
Scripts for "Efficient Hyperparameter Optimization by Using Bayesian Optimization for Drug-Target Interaction Prediction"
akiyamalab/restretto
REstretto (REuse of sub-STRuctures as an Effective Technique for protein-ligand docking TOol): An virtual screening-oriented protein-ligand docking tool with reuse of fragments
akiyamalab/cycpeptppb
akiyamalab/ghostz
GHOSTZ: A high-speed homology search tool to detect remote homologues like BLAST using database subsequence clustering.
akiyamalab/SPDRank
Learning-to-Rank Technique based on Ignoring Meaningless Ranking Orders between Compounds
akiyamalab/GMpipeline
akiyamalab/megadock_hpccm
MEGADOCK with HPC-Container-Maker
akiyamalab/PAPPION
PAPPION: Fast and Accurate Protein-Protein Interaction Predictions by Structural Profiling and Stacking
akiyamalab/fragpair-prescreening
akiyamalab/exprorer
EXPRORER: Rational cosolvents set construction method for cosolvent molecular dynamics (CMD) with large-scale computation
akiyamalab/kmer-table
akiyamalab/mpidp
A task processing framework implemented in C++ using MPI library
akiyamalab/NNSim
akiyamalab/tsss
Homology search software based on two-step seed search strategy