akre96
PhD Candidate - UCLA Medical Informatics. Working in digital health, mental health, and consumer wearable devices
University of California, Los AngelesLos Angeles
Pinned Repositories
akre96.github.io
Samir Akre's Personal Website
ATOM_local
BABEProject
This project is an analysis software for the Baby Associated Built Environment Microbiome Project (BABE Project). Inputs are the temperature/humidity and beam-break data from our sensors.
BUS_tumor_classification
cdc_overdose
Code for analysis and results generated in the paper "COVID-19 and the Drug Overdose Crisis: Uncovering the Deadliest Months in the United States, January-July 2020" Published in AJPH 2021
CovidCompare
GeneDiagrams
This application is designed to make the process of drawing Gene Circuits easier and to scale. This project was created for and funded by the Mills Lab at UC-Davis.
opthamology_image_processing
UCLA 224B Course Code
ResistBlast
This script is intended to match potential antibiotic resistance found in WGS sample to the sequence in the WGS data and run a blast search to determine what species it may have come from. Returns a CSV file of the data. Designed for use at the Mills Lab @ UC Davis.
motrpac-frontend
User interface and Frontend for MoTrPAC Bioinformatics Center
akre96's Repositories
akre96/cdc_overdose
Code for analysis and results generated in the paper "COVID-19 and the Drug Overdose Crisis: Uncovering the Deadliest Months in the United States, January-July 2020" Published in AJPH 2021
akre96/CovidCompare
akre96/BABEProject
This project is an analysis software for the Baby Associated Built Environment Microbiome Project (BABE Project). Inputs are the temperature/humidity and beam-break data from our sensors.
akre96/BUS_tumor_classification
akre96/opthamology_image_processing
UCLA 224B Course Code
akre96/akre96.github.io
Samir Akre's Personal Website
akre96/ATOM_local
akre96/GeneDiagrams
This application is designed to make the process of drawing Gene Circuits easier and to scale. This project was created for and funded by the Mills Lab at UC-Davis.
akre96/ResistBlast
This script is intended to match potential antibiotic resistance found in WGS sample to the sequence in the WGS data and run a blast search to determine what species it may have come from. Returns a CSV file of the data. Designed for use at the Mills Lab @ UC Davis.
akre96/ATOM_resin
akre96/BLEtoStrideSight
Interface to interact with StrideSight prototype and collect data
akre96/DGC_Migraine_Study
Analysis of Depression Grand Challenge migraine study
akre96/HSPC_Project
Human Stem and Progenitor Cell Project Barcode Analysis
akre96/iGEM_CBCR-Model
Deployable Flask App version of CBCR Model
akre96/iGemMatch
iGem Collaboration website
akre96/mHealth-feature-generation
akre96/mhealth_anomaly_detection
Anomaly detection method comparison on simulated and real mobile health (mHealth) datasets
akre96/nextflow_test
akre96/OneCodexTakeHome
Scripts Used in take-home task for OneCodex
akre96/OPTIMA_sleep_quality
Code for the analysis of sleep quality measured by self-report or consumer wearable devices in those with depression
akre96/predict_selfreport_items
Predict self-report items from digital sensing data - OPTIMA study @UCLA
akre96/profile-hugo
akre96/pyvenn
2 ~ 6 sets venn diagram for python
akre96/react-grid-heatmap
A react component for heatmap visualisation in grid layout
akre96/RoastProfiler
akre96/spaghettiCode
Misc. code from different projects
akre96/Unite_DITSY_Compare