Pinned Repositories
clade-based-family-analysis
monophyletic clade based analysis of family trees using ete
family-sets-comparison-tool
Container for comparing two sets of gene families
genefamily-domain-composition-cosine-scoring
Container for domain composition based genefamily scoring
genefamily-sets-comparison-tool
Tool for comparing two sets of gene families
hmmsearch-hmmscan-family-merging
Container for HMMSEARCH-HMMSCAN based family merging workflow
overcl-detection-correction
Container for tree-based overclustering detecting and correction of gene families
PMC-OA-download
protein-domain-evolution-project
Cyber Carpentry 2019 Project
undercl-detection-correction
Container for under-clustering detection and correction of gene-famiiies
usgs-earthquake-data-analysis
akshayayadav's Repositories
akshayayadav/family-sets-comparison-tool
Container for comparing two sets of gene families
akshayayadav/PMC-OA-download
akshayayadav/protein-domain-evolution-project
Cyber Carpentry 2019 Project
akshayayadav/undercl-detection-correction
Container for under-clustering detection and correction of gene-famiiies
akshayayadav/BBOX1_rnaseq_analysis
BBOX1 rnaseq analysis
akshayayadav/bern
A neural named entity recognition and multi-type normalization tool for biomedical text mining
akshayayadav/bert
TensorFlow code and pre-trained models for BERT
akshayayadav/BERT-custom-NER
Repository for BERT-based custom NER pipeline
akshayayadav/BERT-custom-RE
Repo of customized BERT-based Relation Extraction for biomedical data
akshayayadav/BERT-Relation-Extraction
PyTorch implementation for "Matching the Blanks: Distributional Similarity for Relation Learning" paper
akshayayadav/biobert
BioBERT: a pre-trained biomedical language representation model
akshayayadav/biobert_embedding
Token and Sentence level embeddings from BioBERT model
akshayayadav/bioinformatics_ossu
:microscope: Path to a free self-taught education in Bioinformatics!
akshayayadav/bluebert
BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).
akshayayadav/Deep_learning_examples
Examples of using deep learning in Bioinformatics
akshayayadav/deeplearning-biology
A list of deep learning implementations in biology
akshayayadav/invitae-exercise
Repository containing solution for Bioinformatics Exercise B.2
akshayayadav/isimp
A sentence simplification system
akshayayadav/KGen
Knowledge graphs generation from unstructured text.
akshayayadav/machine-learning-articles
🧠💬 Articles I wrote about machine learning, archived from MachineCurve.com.
akshayayadav/ppmi
Analysis of Parkinson's Progressive Markers Initiative Data
akshayayadav/PPMI-Subtype-Analysis
Subtype analysis with disease progression for Parkinson's Disease (Nature Scientific Reports)
akshayayadav/pyFTPclient
FTP client written in python with monitoring and reconnection
akshayayadav/PyTorch-for-Deep-Learning-and-Computer-Vision-Course-All-Codes-
PyTorch for Deep Learning and Computer Vision Course
akshayayadav/PyTorchUltimateMaterial
This repo holds material for the Udemy course "PyTorch Ultimate"
akshayayadav/TCR_epitope_prediction
akshayayadav/TCRconv
TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TCRs and convolutional neural networks for the prediction.
akshayayadav/udify
A single model that parses Universal Dependencies across 75 languages. Given a sentence, jointly predicts part-of-speech tags, morphology tags, lemmas, and dependency trees.
akshayayadav/UmlsBERT
akshayayadav/ViR
ViR is designed to solve the dispersion of reads due to intrasample variability for a reliable identification of lateral gene transfer events, with a focus on viral integrations