A small web application to be able to visualize data from a GO Enrichment Analysis in multiple dimensions using D3js.
You can use this application online directly at the GlycoToolkit website
1] Create a tab delimited text file with the following structure of columns:
| index | go | fold_enrichment | log_fdr | gene_count |
|---|---|---|---|---|
| 1 | septate junction (GO:0005918) | > 100 | 2.9136 | 2 |
Where:
- index : numerical index of the go term
- go : The GO term
- fold_enrichment : The fold enrichment of the GO term
- log_fdr : The -Log10(FDR)
- gene_count : The number of genes associated with the GO term.
This file can be created using Excel and saved as a Text (Tab delimited) (*.txt) file.
The output file should look like the example_data file provided in this repository.
2] Open the GO Visualizer and click on the file input field to locate the file on your computer.
3] Click on the "Load File" button to load the file and see the data visualization.
4] Click on the "Save SVG" button to save the data visualization as an SVG vector graphic image which can be edited in most illustration applications (e.g. Inkscape).