alafia-ai/alafia-apps

Containerized apps and launchers for performing medical imaging on the appliance

alafia-apps

Introduction

This repository contains the files to build and deploy the following apps on Alafia's ARM64 workstation:

• Caddy & Bento
• Freesurfer
• FSL
• CONN Toolbox
• OHIF Viewer
• Neurodesktop

Usage

1. Install Docker and Git LFS
2. Clone the repos and LFS objects with git clone --recursive https://github.com/Alafia-Ai/alafia-apps.git alafia-ai && git -C alafia-ai/alafia-conn-toolbox lfs fetch --all
3. Move to /opt with sudo mv alafia-ai /opt/alafia-ai
4. Install the apps by running ./install.sh (Requires sudo. Also, you may need to make the script executable with chmod +x install.sh)
5. Uninstall the apps by running ./install.sh --uninstall

Noteworthy directories

• /opt/alafia-ai - (A.K.A {alafia_app_dir}) Primary installation directory for this repository (contains installation files and tracks updates)
• /etc/systemd/system - Systemd service file installation directory
• /usr/share/applications - *.desktop file installation directory to get icons and launchers to show up in the system app launcher menu

File Conventions

• {alafia_app_dir}/alafia-{app_name}/alafia-{app-name}.sh - Entrypoint / launcher for each app
• {alafia_app_dir}/alafia-{app_name}/alafia-{app-name}.svg - Fixed icon location for each app
• {alafia_app_dir}/alafia-{app_name}/alafia-{app-name}.svg - Fixed icon location for each app