Pinned Repositories
beautifulsoup-bestofchicago-example
beautifulsoup-bestofchicago-example
cellranger
data_science_fun_conference_2015_pandas_in_a_hurry
iPython notebooks and data files for the 'Pandas in a Hurry' tutorial of the 2015 San Diego Data Science Fun Conference
docker-biopython
docker-biopython
docker-crispr
docker-crispr
docker-miniconda
docker-miniconda
docker2singularity
A docker image for converting docker images to singularity images.
geekgirl
GeekGirl Conference 2014
particle_filter_demo
Example of a simple particle filter for robot location, Stanford's Intro to AI
pycrispr
buffet
alaindomissy's Repositories
alaindomissy/cellranger
alaindomissy/affero
alaindomissy/alaindomissy.github.io
alaindomissy/apps
Modular (SCI-F) apps for Singularity containers
alaindomissy/basespaceapp
basespaceapp
alaindomissy/bcellmagic
B and T cell repertoire sequencing analysis pipeline using the Immcantation framework
alaindomissy/bioconda-recipes
Conda recipes for the bioconda channel.
alaindomissy/DunedinPoAm38
R package to implement DunedinPoAm38 in Illumina EPIC and 450k array data
alaindomissy/eido
Validator for PEP objects
alaindomissy/f-scLVM
alaindomissy/fetchngs
Pipeline to fetch metadata and raw FastQ files from public databases
alaindomissy/flowStats
flowStats: algorithms for flow cytometry data analysis using BioConductor tools
alaindomissy/friendlyhello
alaindomissy/hello-world
testing container for pushing to singularity-hub
alaindomissy/lolcow-selfinstalled
alaindomissy/lonnberg_svensson2017
Expression data for Lönnberg + Svensson et al, "Single-cell RNA-seq and computational analysis using temporal mixture modelling resolves Th1/Tfh fate bifurcation in malaria," Science Immunology (2017)
alaindomissy/methylclock
DNA methylation-based clocks
alaindomissy/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
alaindomissy/NGI-ChIPseq
Nextflow ChIP-seq data analysis pipeline, National Genomics Infrastructure, Science for Life Laboratory in Stockholm
alaindomissy/racon
Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr.214270.116
alaindomissy/rnaseq
RNA sequencing analysis pipeline using STAR, HISAT2 and Salmon with gene counts and quality control
alaindomissy/scanpy-scripts
Scripts for using scanpy
alaindomissy/scbatch
A containerized collection of single cell sequencing batch effects correction algorithms
alaindomissy/SCI-F
Standard Container Integration Format
alaindomissy/scrnaseq
A single-cell RNAseq pipeline for 10X genomics data
alaindomissy/singularityhub.github.io
redirect to main http://www.singularity-hub.org site
alaindomissy/singularityware.github.io
base documentation site for Singularity software
alaindomissy/toil
A scalable, efficient, cross-platform and easy-to-use workflow engine in pure Python
alaindomissy/toil-rnaseq-sc
Toil-based RNA-seq pipeline for processing single-cell data
alaindomissy/toil-vg
Distributed and cloud computing framework for vg