Pinned Repositories
201902-sathya-python
Python tutorials
2023-medical-ai
Slides from my Medical AI talk at Plymouth November 2023
allineate
Align lines in a file by the first occurrence of a given substring
bamwindow
Print the number of reads aligning to windows of a fixed size in a BAM file.
ctupdate
A simple script to bulk update file ctime attributes.
fastq-dedup
Identify and group duplicated FASTQ files
fqtools
An efficient FASTQ manipulation suite
gencode-refset
qsubsec templates for generating reference datasets from GENCODE
northernbug10-git-workshop
NorthernBUG10 Introduction to Git Workshop
qsubsec
Simple tokenised template system for SGE
alastair-droop's Repositories
alastair-droop/fqtools
An efficient FASTQ manipulation suite
alastair-droop/qsubsec
Simple tokenised template system for SGE
alastair-droop/bamwindow
Print the number of reads aligning to windows of a fixed size in a BAM file.
alastair-droop/northernbug10-git-workshop
NorthernBUG10 Introduction to Git Workshop
alastair-droop/ctupdate
A simple script to bulk update file ctime attributes.
alastair-droop/201902-sathya-python
Python tutorials
alastair-droop/2023-medical-ai
Slides from my Medical AI talk at Plymouth November 2023
alastair-droop/allineate
Align lines in a file by the first occurrence of a given substring
alastair-droop/apdMisc
Alastair Droop's miscellaneous R functions
alastair-droop/associationGML
A script to convert simple association files to graphML format.
alastair-droop/gencode-refset
qsubsec templates for generating reference datasets from GENCODE
alastair-droop/bitcounts
Count bit frequencies in files
alastair-droop/clipumi
Detection and Removal of initial UMI Tags from FASTQ Files
alastair-droop/ECMCqPCR
R package for analysis of circulating miRNA from qPCR data
alastair-droop/filechars
Tabulate single characters in a file
alastair-droop/filter-counts
Filter HTSeq Counts matrix files
alastair-droop/finalchar
Display the final character of a file
alastair-droop/HDRUK-fellows-day-2018
Machine Learning Resources collected from the HDRUK UK Fellows's day 2018 (2018-11-15)
alastair-droop/marginLines
Simple lines and arrows in R plot margins
alastair-droop/methods-club-20180227
LIMM Methods Club 2018
alastair-droop/mrs-ravoon
Alternative Endings to Alternative Endings to an Unwritten Ballad
alastair-droop/multicomponent
Simple tools to extract multicomponent (FAM & ROX) data from Thermo Fisher EDS and amplification files.
alastair-droop/process-featurecounts
Process and simplify featureCounts output files
alastair-droop/python-flowkit
alastair-droop/qstools
SGE job & log summarisation scripts
alastair-droop/salmon
Salmon quantification of raw FASTQ files
alastair-droop/sc-biostrings
A brief demonstration of some parts of the Bioconductor base Biostrings package.
alastair-droop/scientific-computing
Resources for the Leeds Scientific Computing seminar series
alastair-droop/seqBlocks
Basic DNA ranges for Python
alastair-droop/windowWIG
Generate window mappability values from per-nucleotide WIG data